Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq336791 93.3 5e-14 seq297272 89.7 6e-13 >seq336791 Length=793321 Score = 93.3 bits (102), Expect = 5e-14 Identities = 247/371 (67%), Gaps = 10/371 (3%) Strand=Plus/Plus Query 9523 ACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGC 9582 ||||||||| | ||| ||||| || | || |||||| | |||| || || || || Sbjct 535531 ACGATCAAACCTACCGGGACGTAGTAATGCACGATCAAGAACATCAGGACGGTTTGTAGC 535590 Query 9583 GGCGATGACAACAA-TACCT-GTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGG 9640 || |||| |||| | ||| |||| || |||| || ||||| || || | |||| Sbjct 535591 TGCAATGATCACAACTCCCTCGTTTGCTT--CAAATCCGTCCATTTCGACTAACATTTGG 535648 Query 9641 TTAATAGTTTGTTCCCGTTCATCATT--CGCTG-GCATACCACCAGCACTGCGTTGCTTT 9697 || | ||||| || ||||||||||| ||| | |||||| | | || || Sbjct 535649 TTTAAGGTTTGCTCACGTTCATCATTGCCGCCGCCCATACCGATACCTCT---ATGGCGA 535705 Query 9698 CCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCA 9757 ||||| |||||||| ||||| || || | || || || ||| | | |||| Sbjct 535706 CCCACCGCATCAATTTCATCGATAAAAATAATACAAGGAGCATTACGTTTACCCTGTTCA 535765 Query 9758 AAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG 9817 || | | || ||||| | || || ||||| |||||||| || ||||| | | | || Sbjct 535766 AACATGTTACGCACACGGCTTGCACCGACACCTACAAACATTTCAACAAAATCAGAGCCG 535825 Query 9818 GAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTA 9877 || | | || || ||||||| ||||| ||||| ||| || ||||| |||||| Sbjct 535826 GATATGTTAAAAAACGGAACATTAGCCTCACCTGCAATTGCTTTAGCAAGAAGTGTCTTA 535885 Query 9878 CCCGTACCTGG 9888 || || || || Sbjct 535886 CCGGTTCCAGG 535896 >seq297272 Length=244611 Score = 89.7 bits (98), Expect = 6e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 94798 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 94857 |||| ||||| || |||| ||||| || ||||| ||||||||||| || || ||| Sbjct 163435 TTTGGCGAGCGCATCGTCGCGTTTGCAGCCGTCGAGGGCATCTTCTTCTCGGGATCGTTC 163494 Query 94858 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 94917 | || | ||||| |||||||| || |||||||| || ||| |||| ||||||| Sbjct 163495 GCATCCATCTTCTGGCTGAAGAAGCGGGGACTCATGCCCGGCCTCACCTTCAGCAACGAG 163554 Query 94918 CTTATCTCTCGTGACGAGG 94936 || ||| ||| ||||||| Sbjct 163555 CTCATCAGTCGGGACGAGG 163573 Score = 89.7 bits (98), Expect = 6e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 95161 AACTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAACTTC 95220 ||||| |||| || || |||||||||||| ||||| | | || ||||||||||||||| Sbjct 164981 AACTCGGAGAACCCTTTCGACTTCATGGAGCACATTTCCTTGGAAGGGAAGACAAACTTC 165040 Query 95221 TTCGAAAAGAGGGTTGGGGACTAT 95244 || || |||||||||||||| ||| Sbjct 165041 TTTGAGAAGAGGGTTGGGGAGTAT 165064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 580566922506080