Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq16628 120 3e-22 seq128081 102 9e-17 seq353048 91.5 2e-13 seq297272 91.5 2e-13 >seq16628 Length=231947 Score = 120 bits (132), Expect = 3e-22 Identities = 280/414 (68%), Gaps = 14/414 (3%) Strand=Plus/Plus Query 79480 TCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGG 79539 || ||||||||||| |||||||||||||||| || ||| | ||| ||| ||||| Sbjct 199950 TCTGCGTGCCACGGTTCCAGATAGATGGCGATCGCTCCCGGTCTTTTGTTGCCACCCTGA 200009 Query 79540 TTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACG 79599 | |||||| || ||||||||||| | ||||| |||||||| || || |||| ||| | Sbjct 200010 TCGACGTAACGTGCCGTGTTGTTATACACTCGTAGCATGGGTACAATACCGT--TCGATG 200067 Query 79600 --CCGTTCGTCCCGTTGATTCGT--GTACCGCTCGCCCGAATGTTCGAGCA-GTGGATTC 79654 || || || || || | || | || || |||||||| | | | || |||| Sbjct 200068 TACCATTTGTTCC--TGCTATGTAACTTCCAGAAGCACGAATGTT-GTGTATGTTAATTC 200124 Query 79655 CGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCT 79714 | || || || | | | || || ||| | || |||| || || || ||||| || || | Sbjct 200125 CTATTCCACCAGCCGATTTTGAAATGAGTGCACACTGTTTCAGTGTATCGTATATTCCTT 200184 Query 79715 CGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTAC 79774 | || ||||| ||||| | | || || ||||||| || || || || | Sbjct 200185 CTATGCTATCGTCTTTCATTTGCAATAAAAAACAACTCGACAGTTGCGGTTTAGGAGTCC 200244 Query 79775 CGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCGTACG 79834 | |||||||| || || || | || ||||| || | |||| ||| || | ||||| Sbjct 200245 CAGCGTTGAAAAGTGTGGGAGATGCTTGCGTAAACCATTTTTCAGACATGAGGTTGTACG 200304 Query 79835 TCTCCTTGACGCGCGG--GAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCAT 79886 | || | ||| | | || ||||| ||||| ||||| | || |||||||| Sbjct 200305 TTTCAAT--CGCACTGCTAAGATCGTCCCCGTGAATGCCAATCGAAACGCGCAT 200356 >seq128081 Length=1306280 Score = 102 bits (112), Expect = 9e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 19493 TTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGATTTCCTCGAACTGCGCCTG 19552 || || || ||||| |||||||||||||||||||| | || ||||| || ||| | Sbjct 763208 TTTGCGATGTACCTGGAGCCATGGCACGCGGACGTGTTTGACTTCCTGGACCTGAAAAAG 763267 Query 19553 AACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCACGGCCTTGTGGATTCCGGAC 19612 ||| ||| | ||||||| || || || |||||| ||| | ||||| || ||| Sbjct 763268 AACACGGGCAAGGAGGAGAACCGGGCACGGGATCTCTTCTACGCCCTCTGGATCCCAGAC 763327 Query 19613 CTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACCTGATGTGCCCGCACGAATGC 19672 || |||||| | ||| || |||| | ||| ||| ||||| || || || ||| Sbjct 763328 CTGTTCATGCGGCGGGTGGAACAGGATCAGATGTGGTCCCTCATGTGTCCCCATGAGTGC 763387 Query 19673 CCTGGCCTACCCGACGTCTACGGCGA 19698 |||||||| | ||| |||||||| || Sbjct 763388 CCTGGCCTGCACGAGGTCTACGGAGA 763413 Score = 82.4 bits (90), Expect = 8e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 79647 GTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTA 79706 || || |||||| || || | ||||||||||| |||| || | ||| || || ||||| Sbjct 761770 GTTGACTCCGATTCCGCCTGCAGACTTGGAGATGAGCGCACATTGCTTCAGGGTGTCGTA 761711 Query 79707 GATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCT 79751 ||| ||||| || |||||||||||| || |||||||||||| Sbjct 761710 GATACCCTCTATACTGTCGTCCTTCATTTGGAGCAGGAAGCAGCT 761666 Score = 82.4 bits (90), Expect = 8e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 78507 GAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTGGTCGTGTACGGCTCGAAAGCCTC 78566 |||||| |||| || ||| || |||||||||| | ||||||||||||| | ||| Sbjct 776079 GAACTCTCCGGAAAGCACCCGCCGGCTGTAGATGTTGCTGGTGTACGGCTCGATCGACTC 776020 Query 78567 GTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCATGGGTGC 78611 ||||| || | |||||| || ||||| || |||||||| ||||| Sbjct 776019 ATTGTTGCCGAGGATCTGTGCTGTCGACGCCGTCGGCATCGGTGC 775975 >seq353048 Length=1477 Score = 91.5 bits (100), Expect = 2e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 79647 GTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTA 79706 || || |||||| || || | ||||||||||| |||| |||| ||| || || ||||| Sbjct 490 GTTGACTCCGATTCCGCCTGCAGACTTGGAGATGAGCGCACACTGCTTCAGGGTGTCGTA 431 Query 79707 GATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCT 79751 ||||||||| || |||||||||||| || |||||||||||| Sbjct 430 GATGCCCTCTATACTGTCGTCCTTCATTTGGAGCAGGAAGCAGCT 386 >seq297272 Length=244611 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60345 AACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAG 60404 ||||||||||||| |||||| ||| || |||||||||||||| ||||||||||||||| Sbjct 164990 AACCCTTTCGACTTCATGGAGCACATTTCCTTGGAAGGGAAGACAAACTTCTTTGAGAAG 165049 Query 60405 CGGGTCGGGGATTAT 60419 |||| ||||| ||| Sbjct 165050 AGGGTTGGGGAGTAT 165064 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 59991 GCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTC 60050 || |||||| ||| || || ||||||||||| || |||||| | || |||||||| Sbjct 163453 GCGTTTGCAGCCGTCGAGGGCATCTTCTTCTCGGGATCGTTCGCATCCATCTTCTGGCTG 163512 Query 60051 AAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAG 60110 || ||||| || |||||||| ||||| | ||| ||||||||| || ||||||||| Sbjct 163513 AAGAAGCGGGGACTCATGCCCGGCCTCACCTTCAGCAACGAGCTCATCAGTCGGGACGAG 163572 Query 60111 G 60111 | Sbjct 163573 G 163573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545991355932480