Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq368494 147 2e-30 seq16628 107 2e-18 seq128081 89.7 6e-13 seq297272 86.0 7e-12 >seq368494 Length=1675338 Score = 147 bits (162), Expect = 2e-30 Identities = 305/453 (67%), Gaps = 6/453 (1%) Strand=Plus/Plus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || || || || ||||| || ||||| || || | ||| |||| || || ||| ||| Sbjct 907764 CCTGTGCCAATTCCCTCGGCCCCGTTCACGAGGACCATGGGCAGGATTGGCATGTAGAAC 907823 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCA---GCC 151992 || ||||| | || || ||| || || || |||| |||| | || ||| Sbjct 907824 TCGGGCTCGATCTTCTGGTTGTCGTCGTACAGGTGGTTCAGCACGGGGTCATCCAGCGCC 907883 Query 151993 GGATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCC 152052 || | | | ||| | || ||| |||| |||||||||||||||| |||||| Sbjct 907884 GGCACAATGAGGCGT---GCCAGAGGGCTCAGCATGGTGAAGATGTATCGGGGGCTGGCA 907940 Query 152053 GCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGG 152112 || |||||||| ||| |||||| || |||||||| || |||| || ||||||| | Sbjct 907941 GCGTCCTTGCCCCCTTGCAGCCGGGTCCCAAACTGGCCGATGGGCAGCAGCAGGTTGATG 908000 Query 152113 TTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCA 152172 |||||| |||||| || | ||| |||| | || ||| | || | ||| Sbjct 908001 TTGTTGCTGCCCACAAAGTCCTGGGCCAGGCCGATGATGGTGGACATGAGGGACATCTCA 908060 Query 152173 CCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCC 152232 |||||||| ||||||| ||||| || | | ||||||| ||| |||||||| || ||| Sbjct 908061 CCGTGGTGGTACGCCGAGTGCTCGGCCACCGAGCCCGCCAGCTGGGCCACCTTGATCTCC 908120 Query 152233 GTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACCG 152292 | | ||| ||||| || | ||| | |||||||||||| || || | ||| Sbjct 908121 CGCTTGTCGTTGCGCTTGAAGCACGTGTACAGCACCTTGCGCTGCCCCGGCTTGAGCCCG 908180 Query 152293 TCCACCACGTGAGGAATCGAACGCTTGATGTCC 152325 ||||||| | || ||||| |||| ||||| Sbjct 908181 TCCACCAGGGACGGGATCGAGCGCTCATTGTCC 908213 Score = 141 bits (156), Expect = 1e-28 Identities = 212/299 (71%), Gaps = 4/299 (1%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| ||||| || | ||| ||||| |||||||| || || || || || || || Sbjct 907917 GTGAAGATGTATCGGGGGCTGGCAGCGTCCTTGCCCCCTTGCAGCCGGGTCCCAAACTGG 907976 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || | ||| || ||||| | ||||||| ||||||||||| || |||| | || Sbjct 907977 CCGATGGGCAGCAGCAGGTTGATGTTGTTGCTGCCCACAAAGTCCTGGGCCAGGCCGATG 908036 Query 117425 ATCGT--ACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGC 117482 || || || | |||| | |||||| ||||| ||||||| ||||| ||||| ||| Sbjct 908037 ATGGTGGACAT--GAGGGACATCTCACCGTGGTGGTACGCCGAGTGCTCGGCCACCGAGC 908094 Query 117483 CCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCA 117542 |||||||||| |||||||| || || | | ||| ||||| ||| | || | || Sbjct 908095 CCGCCAGCTGGGCCACCTTGATCTCCCGCTTGTCGTTGCGCTTGAAGCACGTGTACAGCA 908154 Query 117543 CCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAACGCTTGATGTCC 117601 |||||||||| | ||||| || || ||| ||| | |||||||| |||| ||||| Sbjct 908155 CCTTGCGCTGCCCCGGCTTGAGCCCGTCCACCAGGGACGGGATCGAGCGCTCATTGTCC 908213 Score = 82.4 bits (90), Expect = 8e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 152734 AGCTCGATCAGCTTCGGCCAGTACACGTGGAACATGTTGAGGACCAAGCCCTTGATGTGC 152793 |||| || ||| |||||| | ||||| | ||||| |||| ||||||||||||| Sbjct 908640 AGCTTGAGCAGTGACGGCCAATTGTGGTGGATAAAGTTGATCACCAGGCCCTTGATGTGC 908699 Query 152794 GATCCGTCAAGATCCGCGTCGGTCATGATCATCAGACGACCGTAGCGCAG 152843 || ||||| | ||| ||| |||||||||||||| || |||||||| || Sbjct 908700 GAGCCGTCCTGGTCCTGGTCTGTCATGATCATCAGGCGGCCGTAGCGGAG 908749 Score = 82.4 bits (90), Expect = 8e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 153832 AATTTTGAACTGAAAACGTTAGCCAACTTGGCACCGTAACCATTGCGACCGCCCGTCACG 153891 || |||| ||||| | ||| ||||||||| ||||| || ||||| || |||||||| Sbjct 917162 AACTTTGTGCTGAAGATGTTGCACAACTTGGCTCCGTAGCCGTTGCGGCCTCCCGTCACC 917221 Query 153892 CGTTGTTCCTCGTCGTTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGATGAG 153944 || |||||||||||||||||||| || | ||||| || |||||||| Sbjct 917222 TTTTTCTCCTCGTCGTTGTAGTTGGACGACGTGAGGAGGTGTCCGAAGATGAG 917274 >seq16628 Length=231947 Score = 107 bits (118), Expect = 2e-18 Identities = 357/546 (65%), Gaps = 12/546 (2%) Strand=Plus/Minus Query 53242 TGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAA 53301 ||| |||||| || | ||| |||| | |||||||| || | || || || ||||| Sbjct 200309 TGAAACGTACAACCTCATGTCTGAAAAATGGTTTACGCAAGCATCTCCCACACTTTTCAA 200250 Query 53302 CGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTC 53361 |||||| || | | || || ||||||| || || | || ||||| || || Sbjct 200249 CGCTGGGACTCCTAAACCGCAACTGTCGAGTTGTTTTTTATTGCAAATGAAAGACGATAG 200190 Query 53362 GATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGG 53421 || || || || ||||| || || || ||||||| | ||| || || | | | ||||| Sbjct 200189 CATAGAAGGAATATACGATACACTGAAACAGTGTGCACTCATTTCAAAATCGGCTGGTGG 200130 Query 53422 TATCGGTATCCAC-TGCTCGAACGTCCGTGCGAACGGCAC--ACCAATCAAGGGGACGAA 53478 || || || || | | | ||| | ||||| || | || | || || || || Sbjct 200129 AATAGGAATTAACATACAC-AACATTCGTGCTTCTGGAAGTTACATAGCA--GGAACAAA 200073 Query 53479 CGG--CGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTAC 53536 || | ||| | || || || || ||||| || || | ||||||||||| || ||| Sbjct 200072 TGGTACATCGA--ACGGTATTGTACCCATGCTACGAGTGTATAACAACACGGCACGTTAC 200015 Query 53537 GTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCAC 53596 ||| | |||||||| || | ||| || |||||||||| || || ||||||||| Sbjct 200014 GTCGATCAGGGTGGCAACAAAAGACCGGGAGCGATCGCCATCTATCTGGAACCGTGGCAC 199955 Query 53597 GCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC 53656 || || | | || ||| | || || ||| ||| | ||||||| | Sbjct 199954 GCAGATGTGTTCGATTTTTTGGATCTAAAAAAAAATACCGGTAAAGAAGAGAGTAGGGCA 199895 Query 53657 CGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGG-AGAAGGA 53715 ||||| || ||| | | |||||||||| || | |||||| ||| ||||| ||||| Sbjct 199894 CGTGATCTTTTTTACGGTTTGTGGATTCCCGATTTATTCATGAAAAGGGTGGAAGAAGAT 199835 Query 53716 CGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGA 53775 || | |||| ||||||| || |||| | || ||| || | ||| ||||| || Sbjct 199834 GGAATA-TGGTCGTTGATGTGTCCACACGAAAGTCCTCACCTGCAAGATGTATACGGCGA 199776 Query 53776 GGAGTT 53781 || || Sbjct 199775 AGACTT 199770 >seq128081 Length=1306280 Score = 89.7 bits (98), Expect = 6e-13 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 ||| | |||||| ||| | |||| || ||||| || |||||||| || |||||| | Sbjct 775951 GGCGTTCGCAACAGCCTTTTGCTGGCACCGATGCCGACGGCGTCGACAGCACAGATCCTC 776010 Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTAC 55579 |||||||| ||| || ||||||||||||| | |||||||||| Sbjct 776011 GGCAACAATGAGTCGATCGAGCCGTACACCAGCAACATCTAC 776052 >seq297272 Length=244611 Score = 86.0 bits (94), Expect = 7e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 74462 ATAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCAT 74521 ||| || || |||| ||| ||||| ||||| |||||||||||||| || |||| |||||| Sbjct 165064 ATACTCCCCAACCCTCTTCTCAAAGAAGTTTGTCTTCCCTTCCAAGGAAATGTGCTCCAT 165005 Query 74522 CCAGTCGAAAGGGTTCT 74538 ||||||||||||||| Sbjct 165004 GAAGTCGAAAGGGTTCT 164988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 544688600821600