Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq118272 194 2e-44 seq368494 165 9e-36 >seq118272 Length=246527 Score = 194 bits (214), Expect = 2e-44 Identities = 179/227 (79%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||||||||| || || |||||||| || || || ||||||||| | | Sbjct 49868 ATGCAGATTTTTGTCAAGACCCTCACTGGCAAGACGATCACGCTCGAGGTTGAGCCGAGC 49927 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| ||||||| ||||| ||||||||||||||||| || || || ||| Sbjct 49928 GACACGATCGAAAACGTGAAGGCCAAAATCCAGGACAAGGAGGGAATCCCCCCGGATCAG 49987 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || || |||||||||||||| | |||||||| | ||||| || Sbjct 49988 CAGCGTCTGATCTTCGCCGGCAAGCAACTCGAGGACGGCCGTACCCTCTCCGACTACAAC 50047 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || ||||| ||||| || ||| ||||||| |||||||| Sbjct 50048 ATCCAGAAAGAGTCCACCCTTCACCTGGTCCTGCGTCTGCGCGGTGG 50094 Score = 190 bits (210), Expect = 2e-43 Identities = 179/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| || || || ||||||||||| |||||||| ||||| ||| | || Sbjct 51008 ATGCAAATTTTTGTAAAAACTCTGACCGGCAAGACCATTACTCTCGAGGTCGAGCCCAGT 51067 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| |||| || || || ||||||||||| || |||||||| ||||| Sbjct 51068 GACACCATCGAAAACGTGAAAGCCAAGATCCAGGACAAGGAAGGGATTCCTCCGGACCAA 51127 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || ||||| || ||||| || ||||| | ||||||||| | ||||| || Sbjct 51128 CAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAGGACGGTCGTACCCTGTCGGACTACAAC 51187 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||| || |||||||| || || || || |||| || ||||||||| Sbjct 51188 ATCCAGAAAGAATCCACCCTCCACCTGGTTCTGCGGCTCCGCGGTGGA 51235 Score = 188 bits (208), Expect = 8e-43 Identities = 178/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| ||||| || ||||||||||| || || || || |||||| | || Sbjct 50780 ATGCAAATCTTTGTAAAGACTCTGACCGGCAAGACCATCACCCTCGAAGTTGAGCCCAGT 50839 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | ||| | ||||| || || || ||||||||||| ||||| || |||||| Sbjct 50840 GATACCATCGAAAACGTCAAGGCAAAGATCCAAGACAAGGAGGGCATTCCACCTGACCAG 50899 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || || || ||||||||||| | || || || ||||||| || Sbjct 50900 CAGCGTCTCATCTTCGCCGGCAAACAACTCGAGGACGGCCGCACGCTGTCAGACTACAAC 50959 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || ||||| |||||||| || |||| ||||| ||||| Sbjct 50960 ATCCAGAAAGAGTCCACCCTTCATCTTGTGCTGCGACTTCGTGGTGG 51006 Score = 185 bits (204), Expect = 1e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || |||||||||||||| || || ||||| ||| | || Sbjct 50552 ATGCAGATCTTCGTTAAGACTCTGACCGGCAAGACTATCACACTGGAGGTGGAGCCCAGT 50611 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||||| ||||||||||||||||| || |||||||| || ||| Sbjct 50612 GACACGATCGAGAACGTGAAGGCGAAAATTCAGGACAAGGAAGGTATTCCTCCCGATCAG 50671 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || |||||||| ||||| ||||| |||| ||| ||||| | ||||| || Sbjct 50672 CAGCGTCTGATCTTTGCTGGCAAGCAGCTCGAAGATGGTCGCACCCTGTCGGACTACAAC 50731 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || || || || ||||| || |||| || || ||||| Sbjct 50732 ATCCAGAAAGAGTCTACCCTCCATCTGGTGCTGCGACTGCGTGGTGG 50778 Score = 179 bits (198), Expect = 4e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| ||||| || || ||||| ||||| || || || ||||| ||| | | Sbjct 50096 ATGCAGATCTTCGTCAAAACCCTCACCGGTAAGACAATCACACTGGAGGTGGAGCCCAGC 50155 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||||| ||||||||||||||||| || |||||||| || ||| Sbjct 50156 GACACAATCGAGAACGTGAAGGCCAAAATTCAGGACAAGGAAGGCATTCCTCCCGATCAG 50215 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || ||||| || ||||| ||||| |||| || ||||| | || || ||| Sbjct 50216 CAGCGTCTGATCTTTGCCGGCAAGCAGCTCGAAGATGGCCGAACCCTGTCGGATTACAAT 50275 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || ||||| ||||| || ||| ||||||| |||||||| Sbjct 50276 ATCCAGAAAGAGTCCACCCTTCACCTGGTCCTGCGTCTGCGCGGTGG 50322 Score = 168 bits (186), Expect = 8e-37 Identities = 176/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| || ||||| || || || ||||| || || || ||||| ||| | | Sbjct 51235 AATGCAAATCTTCGTGAAGACCCTGACGGGGAAGACCATCACCCTGGAGGTCGAGCCCAG 51294 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| | || | |||||||| || ||||||||||| || ||||| || ||||| Sbjct 51295 CGACACCATCGAGAACGTCAAGGCTAAGATCCAGGACAAGGAAGGCATTCCCCCGGACCA 51354 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| || |||||||| ||||| | || |||| || ||||| | || || || Sbjct 51355 GCAGCGTCTCATCTTTGCTGGAAAGCAGTTGGAAGATGGCCGAACCCTGTCCGATTACAA 51414 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||||||||| ||||| || || || ||| ||||||| || ||||| || Sbjct 51415 CATCCAAAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTCCGTGGTGGCCA 51465 Score = 149 bits (164), Expect = 7e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| ||||| || || |||||||| || || || || || || ||| | || Sbjct 50324 ATGCAGATCTTCGTCAAAACCCTCACCGGCAAAACCATCACGCTGGAAGTCGAGCCCAGT 50383 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| |||| | || || ||||| ||||||||||| || || || || || ||| Sbjct 50384 GACACAATTGAAAATGTCAAAGCCAAAATCCAGGACAAGGAAGGGATCCCCCCGGATCAG 50443 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | || || || || ||||||||||| |||| || ||||| | ||||| || Sbjct 50444 CAGCGTTTGATCTTCGCCGGCAAGCAACTCGAAGATGGCCGCACCCTGTCGGACTACAAC 50503 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || | || | || || |||||||| Sbjct 50504 ATCCAGAAGGAGTCCACCCTACACTTGGTTCTCCGGCTCCGCGGTGG 50550 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| ||||| || || ||||| || || || || || ||||| ||| | | Sbjct 49640 ATGCAGATCTTCGTCAAAACCCTGACCGGGAAAACCATCACGCTCGAGGTGGAGCCGAGC 49699 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| |||||||||| ||||| ||||||||||| || || || |||||| Sbjct 49700 GACACGATTGAAAACGTGAAGGCTAAGATTCAAGACAAGGAGGGGATCCCGCCCGACCAG 49759 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || || || || ||||| || || || | || ||| | | ||||| || Sbjct 49760 CAACGTCTGATCTTCGCCGGCAAGCAGCTTGAAGACGGACGCACCTTGTCCGACTACAAC 49819 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| ||||| || || || ||| |||| || ||||| || Sbjct 49820 ATTCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGGCTGCGCGGAGG 49866 >seq368494 Length=1675338 Score = 165 bits (182), Expect = 9e-36 Identities = 304/443 (69%), Gaps = 2/443 (0%) Strand=Plus/Minus Query 31961 AGCGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACG 32020 |||| || || || | ||| |||||| |||||||| |||||||||||| | ||| Sbjct 908205 AGCGCTCGATCCCGTCCCTGGTGGACGGGCTCAAGCCGGGGCAGCGCAAGGTGCTGTACA 908146 Query 32021 CCTGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGG 32080 | ||| ||||| ||| | | || || |||||||| |||||| |||||| |||| Sbjct 908145 CGTGCTTCAAGCGCAACGACAAGCGGGAGATCAAGGTGGCCCAGCTGGCGGGCTCGGTGG 908086 Query 32081 CAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTG 32140 | ||||| |||| || |||||||| ||| ||| ||| | |||||| || ||| | Sbjct 908085 CCGAGCACTCGGCGTACCACCACGGTGAGATGTCCCTCATGTCCACCATCATCGGCCTGG 908026 Query 32141 CTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCC-ATCTGGACAGTTTGGG 32199 | ||| ||||||| || || ||| | ||| | || ||| ||| || ||||||||| Sbjct 908025 CCCAGGACTTTGTGGGCAGCAACAACATCAACCTGCTGCTGCCCATC-GGCCAGTTTGGG 907967 Query 32200 ACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCACCCGTCTCGCA 32259 |||||||| || |||||||| ||||| ||| |||| |||||||||||| || Sbjct 907966 ACCCGGCTGCAAGGGGGCAAGGACGCTGCCAGCCCCCGATACATCTTCACCATGCTGAGC 907907 Query 32260 CCTTCGACGCGCAAGATTTTCGACCCGTCGGACGATGCGGTGCTCAAGTACAATTTTGAT 32319 ||| | | ||| ||| | || ||| || | ||||| || || | || Sbjct 907906 CCTCTGGCACGCCTCATTGTGCCGGCGCTGGATGACCCCGTGCTGAACCACCTGTACGAC 907847 Query 32320 GACGGTCAGCGGGTCGAGCCGGTGTTCTACAGTCCGGTGCTTCCGATGATCTTGGTGAAC 32379 ||| ||| | ||||||| | |||||||| || | || || ||| || | |||||| Sbjct 907846 GACAACCAGAAGATCGAGCCCGAGTTCTACATGCCAATCCTGCCCATGGTCCTCGTGAAC 907787 Query 32380 GGTGCAGAAGGCATCGGAACGGG 32402 || || || || || || || || Sbjct 907786 GGGGCCGAGGGAATTGGCACAGG 907764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567676335871040