Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq8286 105 5e-18 seq266908 98.7 8e-16 seq16628 96.9 3e-15 >seq8286 Length=1257 Score = 105 bits (116), Expect = 5e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 29882 TCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCT 29941 ||||||| | ||||| | ||| || || || | ||||| ||||| || || ||| | Sbjct 437 TCCACGTGGTTAAGGTAAATGTGGGCATCGCCTAAATTGTGAACAAATTCACCAGGTCGT 496 Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || || | |||||||||| ||||| |||| ||| || || |||||||| ||| Sbjct 497 TTTCCAGTCACCTTTGCCATCATGTGTGTGAGAAGAGCGTAACTCGCAATGTTAAACGGT 556 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || || | |||||||| | || | ||| || || |||||||||||||| | ||| Sbjct 557 ACACCCAATCCCATGTCGGCAGAACGCTGATACAGTTGACACGAGAGCTCATCATCGTCT 616 Query 30062 ACGTAAAACTG 30072 ||||| ||||| Sbjct 617 ACGTAGAACTG 627 >seq266908 Length=1092028 Score = 98.7 bits (108), Expect = 8e-16 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 29894 AGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACG 29953 ||||| | ||| || || || | ||||| ||||| || || ||| | || || || Sbjct 125371 AGGTAAATGTGGGCATCGCCTAAATTGTGAACAAATTCACCAGGTCGTTTTCCAGTCACC 125430 Query 29954 TGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCC 30013 | |||||||||| ||||| |||| ||| || || |||||||| ||||| || | ||| Sbjct 125431 TTTGCCATCATGTGTGTGAGAAGAGCGTAACTCGCAATGTTAAACGGTACACCCAATCCC 125490 Query 30014 ATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTG 30072 ||||| | || | ||| || | |||||||||||||| | ||| ||||| ||||| Sbjct 125491 ATGTCGGCAGAACGCTGATACAATTGACACGAGAGCTCATCATCGTCTACGTAGAACTG 125549 >seq16628 Length=231947 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 29882 TCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCT 29941 ||||||| | ||||| | ||| || || || | ||||| ||||| || || ||| | Sbjct 230583 TCCACGTGGTTAAGGTAAATGTGGGCATCGCCTAAATTGTGAACAAATTCACCAGGTCGT 230642 Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || || | |||||||||| ||||| |||| ||| || || |||||||| ||| Sbjct 230643 TTTCCAGTCACCTTTGCCATCATGTGTGTGAGAAGAGCGTAACTCGCAATGTTAAACGGT 230702 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || || | ||||| || | || | ||| || | |||||||||||||| | ||| Sbjct 230703 ACACCCAATCCCATATCGGCAGAACGCTGATACAATTGACACGAGAGCTCATCATCGTCT 230762 Query 30062 ACGTAAAACTG 30072 ||||| ||||| Sbjct 230763 ACGTAGAACTG 230773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404480709609264