Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq118272 111 1e-19 >seq118272 Length=246527 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | ||| |||| ||| | ||| || ||| ||| || || ||||| || ||||| Sbjct 51007 GCCACCACGAAGTCGCAGCACAAGATGAAGGGTGGACTCTTTCTGGATGTTGTAGTCTGA 50948 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || |||| || |||||||| ||||| || || | |||||| ||||| || || Sbjct 50947 CAGCGTGCGGCCGTCCTCGAGTTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGTGG 50888 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCA 34657 | |||||||||||| |||| |||| || ||| | || || || | ||| | Sbjct 50887 AATGCCCTCCTTGTCTTGGATC-TTTGCCTTGACGTTTTCGATGGTATCACTGGGCTCAA 50829 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| | ||| || || || ||||| | || || ||||| || |||||| Sbjct 50828 CTTCGAGGGTGATGGTCTTGCCGGTCAGAGTCTTTACAAAGATTTGCATG 50779 Score = 109 bits (120), Expect = 3e-19 Identities = 160/221 (72%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || |||| |||| ||||| ||| |||||| |||||||| || || || | || || Sbjct 49857 AGCCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGACAAGGTGCGT 49798 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||||||||| || || ||||| || || | ||| || ||||| ||||| | |||||| Sbjct 49797 CCGTCTTCAAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGGGCGGGATCCCCTCC 49738 Query 34609 TTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTC-TTCGCTCTCCACTTCCACGG 34666 |||||| ||| || | || ||| | ||| ||||| ||| |||||| || | | Sbjct 49737 TTGTCT-TGAATCTTAGCCTTCACGTTTTCAATCGTGTCGCTCG-GCTCCACCTCGAGCG 49680 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | || ||||| ||||| | ||||| || || ||||||||| Sbjct 49679 TGATGGTTTTCCCGGTCAGGGTTTTGACGAAGATCTGCATG 49639 Score = 102 bits (112), Expect = 5e-17 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || |||| |||| ||||| ||| || || || ||||| || || || || || || Sbjct 51225 AGCCGCAGAACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCCGACAGGGTACGA 51166 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| ||||| || || |||||||| || | ||||||||||||||| || | || ||| Sbjct 51165 CCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCCGGAGGAATCCCTTCC 51106 Query 34609 TTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | ||| ||| | || ||||| | ||| || || | || Sbjct 51105 TTGTCCTGGATC-TTGGCTTTCACGTTTTCGATGGTGTCACTGGGCTCGACCTCGAGAGT 51047 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || ||||| | ||||| |||||||| |||||| Sbjct 51046 AATGGTCTTGCCGGTCAGAGTTTTTACAAAAATTTGCATG 51007 Score = 96.9 bits (106), Expect = 2e-15 Identities = 157/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| |||| || || ||| ||| || || ||||| || || || || || || Sbjct 50085 AGACGCAGGACCAGGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTACGG 50026 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || ||||| || ||||| || || | |||||| || ||||| || | ||||||| Sbjct 50025 CCGTCCTCGAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCCGGGGGGATTCCCTCC 49966 Query 34609 TTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTC-TTCGCTCTCCACTTCCACGG 34666 ||||| ||| ||| | || ||| | || ||||| ||| ||| || || | | Sbjct 49965 TTGTCCTGGAT-TTTGGCCTTCACGTTTTCGATCGTGTCGCTCG-GCTCAACCTCGAGCG 49908 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | ||||| || || || | || || ||||||||||||||| Sbjct 49907 TGATCGTCTTGCCAGTGAGGGTCTTGACAAAAATCTGCATG 49867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 313312314779636