Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_028853.1 Length=50078 Score E Sequences producing significant alignments: (Bits) Value seq90406 170 6e-38 seq123050 163 9e-36 seq336791 132 2e-26 seq348097 114 4e-21 >seq90406 Length=52800 Score = 170 bits (188), Expect = 6e-38 Identities = 263/373 (71%), Gaps = 2/373 (1%) Strand=Plus/Plus Query 38864 GTTTTATGGAACCGTTCGCAGATACCATTCGTCTGGGGATGCTTCACTTTCGTTTTCGTA 38923 ||| | || || | |||||| || ||||| || || ||| |||| ||||| ||| Sbjct 184 GTTCTGTGTAATCTTTCGCATATTCCATTAGTTTGAGGAGAACGTGCTTTAGTTTTAGTA 243 Query 38924 TGCTCTATGTCATTTATCGCTAAATAAAGCTCATAATCGTGATTTTCTACCTTGCCACAA 38983 || || || | | ||| || ||||| | |||| || | |||| |||||||||||||||| Sbjct 244 TGATCAATATTTTCTATAGCCAAATATAACTCAAAAGCATGATGTTCTACCTTGCCACAA 303 Query 38984 TATTCACTTCCTCGGTCAGTTAATATGCGTAACATCGGTAAACCTTGGCTTTCAAAGTAT 39043 || || |||||| || || | || | | | |||| | | || | | |||| | Sbjct 304 TACTCTGTTCCTCTATCTGTAAGGATTCTAAGTAGTGGTATATCATGATTATTAAAGAAA 363 Query 39044 GGTAACACTTTATCATTCAGCATATCCGCAGCACTGATAGCGGTCTTCATTGTATAAAGT 39103 |||| || |||||||| | ||||| |||| | || || | ||| ||||| || Sbjct 364 GGTATTACCTTATCATTTAAAATATCAGCAGATGTTATTGCAGACTTATCAGTATAGAG- 422 Query 39104 TTTGCAAA-CGCCACTTTACTGTAAGTATCAATAAACGTTTGTTGATAAATACGACCCAC 39162 |||||||| |||||| || ||||| |||||||| |||||||| || || | ||| || Sbjct 423 TTTGCAAATAGCCACTCTAGAATAAGTGTCAATAAAGGTTTGTTGGTATATTCTACCTAC 482 Query 39163 TCCTTTGAGGTTGCCCACATAGAAAGTATCTTGTGAGCCAAGATAGCCAGGGTGTACCGT 39222 |||||| | || || |||||| | || ||||||| |||||||| ||||| || || Sbjct 483 TCCTTTCATATTACCGACATAGTAGGTGTCTTGTGCACCAAGATAACCAGGATGCTGAGT 542 Query 39223 TTCAATTTCACCA 39235 || ||||| ||| Sbjct 543 ATCGATTTCTCCA 555 Score = 170 bits (188), Expect = 6e-38 Identities = 263/373 (71%), Gaps = 2/373 (1%) Strand=Plus/Plus Query 38864 GTTTTATGGAACCGTTCGCAGATACCATTCGTCTGGGGATGCTTCACTTTCGTTTTCGTA 38923 ||| | || || | |||||| || ||||| || || ||| |||| ||||| ||| Sbjct 48416 GTTCTGTGTAATCTTTCGCATATTCCATTAGTTTGAGGAGAACGTGCTTTAGTTTTAGTA 48475 Query 38924 TGCTCTATGTCATTTATCGCTAAATAAAGCTCATAATCGTGATTTTCTACCTTGCCACAA 38983 || || || | | ||| || ||||| | |||| || | |||| |||||||||||||||| Sbjct 48476 TGATCAATATTTTCTATAGCCAAATATAACTCAAAAGCATGATGTTCTACCTTGCCACAA 48535 Query 38984 TATTCACTTCCTCGGTCAGTTAATATGCGTAACATCGGTAAACCTTGGCTTTCAAAGTAT 39043 || || |||||| || || | || | | | |||| | | || | | |||| | Sbjct 48536 TACTCTGTTCCTCTATCTGTAAGGATTCTAAGTAGTGGTATATCATGATTATTAAAGAAA 48595 Query 39044 GGTAACACTTTATCATTCAGCATATCCGCAGCACTGATAGCGGTCTTCATTGTATAAAGT 39103 |||| || |||||||| | ||||| |||| | || || | ||| ||||| || Sbjct 48596 GGTATTACCTTATCATTTAAAATATCAGCAGATGTTATTGCAGACTTATCAGTATAGAG- 48654 Query 39104 TTTGCAAA-CGCCACTTTACTGTAAGTATCAATAAACGTTTGTTGATAAATACGACCCAC 39162 |||||||| |||||| || ||||| |||||||| |||||||| || || | ||| || Sbjct 48655 TTTGCAAATAGCCACTCTAGAATAAGTGTCAATAAAGGTTTGTTGGTATATTCTACCTAC 48714 Query 39163 TCCTTTGAGGTTGCCCACATAGAAAGTATCTTGTGAGCCAAGATAGCCAGGGTGTACCGT 39222 |||||| | || || |||||| | || ||||||| |||||||| ||||| || || Sbjct 48715 TCCTTTCATATTACCGACATAGTAGGTGTCTTGTGCACCAAGATAACCAGGATGCTGAGT 48774 Query 39223 TTCAATTTCACCA 39235 || ||||| ||| Sbjct 48775 ATCGATTTCTCCA 48787 >seq123050 Length=55999 Score = 163 bits (180), Expect = 9e-36 Identities = 461/699 (66%), Gaps = 17/699 (2%) Strand=Plus/Plus Query 38817 TATAAATTTTCTTCCTAAATGCCACTTGGTAAAATTCTTGTAAGATTGTTTTATGGAACC 38876 ||||||| || || | || || | | |||||||| | | | ||| |||| || Sbjct 13696 TATAAATCTTTTTACGGAAAGCTATATCATAAAATTCATCTTTTAAAGTTCTATGTAATT 13755 Query 38877 GTTCGCAGATACCATTCGTCTGGGGATGCTTCACTTTCGTTTTCGTATGCTCTATGTCAT 38936 |||||| || ||||| || || ||| | || ||||| ||||| || || | | Sbjct 13756 TTTCGCATATTCCATTAGTTTGAGGAGAACGTGCCTTAGTTTTAGTATGATCAATATTTT 13815 Query 38937 TTATCGCTAAATAAAGCTCATAATCGTGATTTTCTACCTTGCCACAATATTCACTTCCTC 38996 ||| || ||||| | |||| || | |||| ||||||||| ||||||||||| |||||| Sbjct 13816 CTATAGCCAAATATAACTCAAAAGCATGATGTTCTACCTTACCACAATATTCCGTTCCTC 13875 Query 38997 GGTCAGTTAATATGCGTAACATCGGTAAACCTTGGCTTTCAAAGTATGGTAACACTTTAT 39056 || || | || | | | |||| | | || | | |||| | |||| || |||| Sbjct 13876 TATCTGTAAGGATTCTCAGTAGTGGTACATCATGATTATTAAAGAAAGGTATTACCTTAT 13935 Query 39057 CATTCAGCATATCCGCAGCACTGATAGCGGTCTTCATTGTATAAAGTTTTGCAAA-CGCC 39115 |||| | ||||| || | | || || | || ||||| || |||||||| ||| Sbjct 13936 CATTTAAAATATCAGCGGATGTTATTGCAGATTTATCAGTATAGAG-TTTGCAAATAGCC 13994 Query 39116 ACTTTACTGTAAGTATCAATAAACGTTTGTTGATAAATACGACCCACTCCTTTGAGGTTG 39175 ||| || ||||| |||||||| |||||||| || || | ||| |||||||| | || Sbjct 13995 ACTCTAGAATAAGTGTCAATAAAGGTTTGTTGGTATATTCTACCTACTCCTTTCATATTA 14054 Query 39176 CCCACATAGAAAGTATCTTGTGAGCCAAGATAGCCAGGGTGTACCGTTTCAATTTCACCA 39235 || ||||| | || ||||||| |||||||| || || || || |||||||| ||| Sbjct 14055 CCGACATAATAGGTGTCTTGTGCACCAAGATAACCGGGATGCTGAGTATCAATTTCTCCA 14114 Query 39236 -CAGGCAATCTCATCTTCTTTCTTACGCTCTAAGGCTTGTACCTGTGTTTCACTGAGTAT 39294 || ||| | | | |||| ||||| || || ||| ||| | |||| Sbjct 14115 TGAGCTAATTTGTTTTGCTTT------TTCTAAAGCAGATATCTGCTCTTCTGTCAGTAA 14168 Query 39295 AATACCTTGTTCTGCAACCAGTT--TTTCCAGGGCGATTAATCTTTGCTTAAAATTGGCA 39352 ||||| | | |||| | || ||| | || | | || || ||| | | | || Sbjct 14169 GATACCGTCCTGTGCA--GATTTAGCTTCTAAAGCTTTGAGTCGTTTCTTTAGAGTTTCA 14226 Query 39353 AGATGATGACGTAACCAAATCGAACGTACACCTCCTGCTGAAACAAAGATGCCTTGTTTA 39412 |||| | |||| ||| || ||||||||||| | | ||| || | || ||||| || Sbjct 14227 AGATCGTTGCGTAGCCAGATAGAACGTACACCACTGGATGACACTATAATACCTTGCTTT 14286 Query 39413 CGGAGTTCCTTACTCACTCTTACCTGTCCAAATGCCGGGTTATCAAGAGCAAACTTCACA 39472 ||| | | ||| | | | ||| |||| || || || || | ||||| || | Sbjct 14287 ATTAGTGCTTGGCTCGCACGAAGCTGACCAAGAGCAGGATTCTCTATAGCAAGATTTATT 14346 Query 39473 ACAGCTTGCTCTAT-TG-CCTCATCAACACGATTTTTTA 39509 || ||||| ||||| || || || |||||||| |||| Sbjct 14347 ACTGCTTGTTCTATATGTTCTGAT--ACACGATTCTTTA 14383 Score = 163 bits (180), Expect = 9e-36 Identities = 461/699 (66%), Gaps = 17/699 (2%) Strand=Plus/Plus Query 38817 TATAAATTTTCTTCCTAAATGCCACTTGGTAAAATTCTTGTAAGATTGTTTTATGGAACC 38876 ||||||| || || | || || | | |||||||| | | | ||| |||| || Sbjct 21231 TATAAATCTTTTTACGGAAAGCTATATCATAAAATTCATCTTTTAAAGTTCTATGTAATT 21290 Query 38877 GTTCGCAGATACCATTCGTCTGGGGATGCTTCACTTTCGTTTTCGTATGCTCTATGTCAT 38936 |||||| || ||||| || || ||| | || ||||| ||||| || || | | Sbjct 21291 TTTCGCATATTCCATTAGTTTGAGGAGAACGTGCCTTAGTTTTAGTATGATCAATATTTT 21350 Query 38937 TTATCGCTAAATAAAGCTCATAATCGTGATTTTCTACCTTGCCACAATATTCACTTCCTC 38996 ||| || ||||| | |||| || | |||| ||||||||| ||||||||||| |||||| Sbjct 21351 CTATAGCCAAATATAACTCAAAAGCATGATGTTCTACCTTACCACAATATTCCGTTCCTC 21410 Query 38997 GGTCAGTTAATATGCGTAACATCGGTAAACCTTGGCTTTCAAAGTATGGTAACACTTTAT 39056 || || | || | | | |||| | | || | | |||| | |||| || |||| Sbjct 21411 TATCTGTAAGGATTCTCAGTAGTGGTACATCATGATTATTAAAGAAAGGTATTACCTTAT 21470 Query 39057 CATTCAGCATATCCGCAGCACTGATAGCGGTCTTCATTGTATAAAGTTTTGCAAA-CGCC 39115 |||| | ||||| || | | || || | || ||||| || |||||||| ||| Sbjct 21471 CATTTAAAATATCAGCGGATGTTATTGCAGATTTATCAGTATAGAG-TTTGCAAATAGCC 21529 Query 39116 ACTTTACTGTAAGTATCAATAAACGTTTGTTGATAAATACGACCCACTCCTTTGAGGTTG 39175 ||| || ||||| |||||||| |||||||| || || | ||| |||||||| | || Sbjct 21530 ACTCTAGAATAAGTGTCAATAAAGGTTTGTTGGTATATTCTACCTACTCCTTTCATATTA 21589 Query 39176 CCCACATAGAAAGTATCTTGTGAGCCAAGATAGCCAGGGTGTACCGTTTCAATTTCACCA 39235 || ||||| | || ||||||| |||||||| || || || || |||||||| ||| Sbjct 21590 CCGACATAATAGGTGTCTTGTGCACCAAGATAACCGGGATGCTGAGTATCAATTTCTCCA 21649 Query 39236 -CAGGCAATCTCATCTTCTTTCTTACGCTCTAAGGCTTGTACCTGTGTTTCACTGAGTAT 39294 || ||| | | | |||| ||||| || || ||| ||| | |||| Sbjct 21650 TGAGCTAATTTGTTTTGCTTT------TTCTAAAGCAGATATCTGCTCTTCTGTCAGTAA 21703 Query 39295 AATACCTTGTTCTGCAACCAGTT--TTTCCAGGGCGATTAATCTTTGCTTAAAATTGGCA 39352 ||||| | | |||| | || ||| | || | | || || ||| | | | || Sbjct 21704 GATACCGTCCTGTGCA--GATTTAGCTTCTAAAGCTTTGAGTCGTTTCTTTAGAGTTTCA 21761 Query 39353 AGATGATGACGTAACCAAATCGAACGTACACCTCCTGCTGAAACAAAGATGCCTTGTTTA 39412 |||| | |||| ||| || ||||||||||| | | ||| || | || ||||| || Sbjct 21762 AGATCGTTGCGTAGCCAGATAGAACGTACACCACTGGATGACACTATAATACCTTGCTTT 21821 Query 39413 CGGAGTTCCTTACTCACTCTTACCTGTCCAAATGCCGGGTTATCAAGAGCAAACTTCACA 39472 ||| | | ||| | | | ||| |||| || || || || | ||||| || | Sbjct 21822 ATTAGTGCTTGGCTCGCACGAAGCTGACCAAGAGCAGGATTCTCTATAGCAAGATTTATT 21881 Query 39473 ACAGCTTGCTCTAT-TG-CCTCATCAACACGATTTTTTA 39509 || ||||| ||||| || || || |||||||| |||| Sbjct 21882 ACTGCTTGTTCTATATGTTCTGAT--ACACGATTCTTTA 21918 >seq336791 Length=793321 Score = 132 bits (146), Expect = 2e-26 Identities = 364/554 (66%), Gaps = 8/554 (1%) Strand=Plus/Minus Query 38849 AATTCTTGTAAGATTGTTTTATGGAACCGTTCGCAGATACCATTCGTCTGGGGATGCTTC 38908 ||||||||| || ||||||| || || || || ||||| || || |||||| | Sbjct 698254 AATTCTTGTTTCATGGTTTTATTAAAACGCTCACACATACCGTTTGTTTGGGGAGCATAT 698195 Query 38909 ACTTTCGTTTTCGTATGCTCTATGTCATTTATCGCTAAATAA-AGCTCATAATCGTGATT 38967 | || ||| | ||||| ||||| | | ||| ||||| || | |||| || |||||| Sbjct 698194 GCCTTAGTTGTAGTATGTTCTATACCTTCTAT-GCTAAGAAATAACTCAAAAGCGTGATG 698136 Query 38968 TTCTACCTTGCCACAATATTCACTTCCTCGGTCAGTTAATATGCGTAACATCGGTAAACC 39027 |||| || || |||||| ||| || || || | || || || || |||| || Sbjct 698135 CTCTATATTTCCCTTATATTCTGATCCACGATCTGTAAGAATACGAAATATTGGTATCCC 698076 Query 39028 TTGGCTTTCAAAGTATGGTAACACTTTATCATTCAGCATATCCGCAGCACTGATAGCGGT 39087 ||| || | |||||||||| ||||| |||||||| |||||| | ||||| || Sbjct 698075 TTGAGCCTCGTACCATGGTAACACGCGGTCATTAAGCATATCAGCAGCAGTAATAGCTGT 698016 Query 39088 CTTCATTGTATAAAGTTTTGCAAACGCCACTTTACTGTAAGTATCAATAAACGTTTGTTG 39147 || ||||| ||||| ||| ||| || || | ||| |||||||||| || Sbjct 698015 TTTATCAGTATATAGTTTAGCATCCGCTACCCTAGTATAACTATCAATAAATACCTGAGA 697956 Query 39148 ATAAATACGACCCACTCCTTTGAGGTTGCCCACATAGAAAGTATCTTGTGAGCCAAGATA 39207 ||||| ||| | ||||| | || || |||||| | ||||| || | || | ||| Sbjct 697955 ATAAACCTTACCTATACCTTTAAAATTTCCTACATAGTACGTATCCTGACATCCTAAATA 697896 Query 39208 GCCAGGGTGTACCGTTTCAATTTCACCACAGGCAATCTCATCTTCTTTCTTACGCT---C 39264 || || || ||| ||||||| ||| || || | ||| || ||||| | Sbjct 697895 ACCTGGATGCTGTGTTGCAATTTCTCCATGAGCT---TCTTTTTCATTACGACGCTTCTC 697839 Query 39265 TAAGGCTTGTACCTGTGTTTCACTGAGTATAATACCTTGTTCTGCAACCAGTTTTTCCAG 39324 || |||||| ||| | |||| | || | |||||| | | || | | | ||| | Sbjct 697838 TAGTACTTGTAACTGAGCTTCAGTAAGAACAATACCATCCTGAGCCATCTTTGCTTCTAA 697779 Query 39325 GGCGATTAATCTTTGCTTAAAATTGGCAAGATGATGACGTAACCAAATCGAACGTACACC 39384 || | | |||| | | |||| | || || |||||||||||| || | || || Sbjct 697778 TGCTTTAAGCCTTTTACTGATATTGTTTAAATCATTACGTAACCAAATTGATCTCACTCC 697719 Query 39385 TCCTGCTGAAACAA 39398 ||| | ||| |||| Sbjct 697718 TCCAGGTGATACAA 697705 >seq348097 Length=12061 Score = 114 bits (126), Expect = 4e-21 Identities = 418/640 (65%), Gaps = 26/640 (4%) Strand=Plus/Minus Query 39034 TTCAAAGTATGGTAACACTTTATCATTCAGCATATCCGCAGCACTGATAGCGGTCTTCAT 39093 |||||| |||||| ||| |||||||||| || |||||| | |||| || ||| Sbjct 11791 TTCAAAAAATGGTATAACTCTATCATTCAGATGGTCTGCAGCAGTTATAGGTGTTTTCTC 11732 Query 39094 TGTATAAAGTTTTGCAAACGCCACTTTACTGTAAGTATCAATAAACGTTTGTTGATAAAT 39153 |||||||| || || || ||| | ||| || || | ||| |||||||||||||| Sbjct 11731 AGTATAAAGCTTACAAATAGCAACTCTTGAGTAGGTCTCTACAAAGGTTTGTTGATAAAT 11672 Query 39154 ACGACCCACTCCTTTGAGGTTGCCCACATAGAAAGTATCTTGTGAGCCAAGATAGCCAGG 39213 ||| || | |||| | || || || || |||||||||| || ||||| || |||| Sbjct 11671 ACGTCCTATGTCTTTAATATTTCCTACGTAATAAGTATCTTGAGATCCAAGGTAACCAGA 11612 Query 39214 GTGTACCGTTTCAATTTCACCACAGGCAATCTCATCTTCTTTCTTACGCTCT-AAG-GCT 39271 | | |||||||| || ||| || || | ||| ||| | || ||| ||| || Sbjct 11611 ACGCATGGTTTCAATCTCGCCAGTTGC-TTCAC-GCTTATTTTTGACTTTCTCAAGTGCG 11554 Query 39272 TGTACCTGTGTTTCACTGAGTATAATACCTTGTTCTGCAACCAGTTT---TTCCAGGGCG 39328 | | |||||| |||||||| ||||| || | | |||||| ||| ||||| | Sbjct 11553 TTAAGCTGTGTGTCACTGAGGATAATGCCATAATTTGCAAC---TTTAGCTTCCAAAGAT 11497 Query 39329 ATTAATCTTTGCTTAAAATTGGCAAGATGATGACGTAACCAAATCGAACGTACACCTCCT 39388 | | | || ||||||||| | |||| || ||| ||||| || | | | || || Sbjct 11496 TTCAGGCGTTTCTTAAAATTCTCTAGATCAT--TGTAGCCAAACAGATCTTGCGCCACCA 11439 Query 39389 GCTGAAACAAAGATGCCTTGTTTACGGAGTTCCTTA-CT---CACTCTT-ACCTGTCCAA 39443 | || | || || ||| || || | ||| ||| || | |||| ||| ||| Sbjct 11438 CCAGAGATAATAATACCTCTCTTCCGTAATTCATTAGCTGTACGTTCTTGACC---CCAT 11382 Query 39444 ATGCCGGGTTATCAAGAGCAAACTTCACAACAGCTTGCTCTATTGCCTCATCAACACGAT 39503 | || || |||| ||| | || || || | | ||| || || ||| ||| Sbjct 11381 AGGCAGGAAATTCAACAGCTATATTAACCACTGAATCCTCAATATTAGCAGGAACGTGAT 11322 Query 39504 TTTTTAAGTTGGGAACGCGTCTATTTTGATTCAGCAATGCTTCAACACCACCTTGCTC-- 39561 | || | | ||| ||| | | | ||| ||||| |||||||||| || Sbjct 11321 TCTTAACGCAGGGCTTTTTCCTACTCATCTCAAACAAAGCTTCTGCACCACCTTGTTCGT 11262 Query 39562 -AACCGCTTGTTGATAACGATAGAATGTATCTCGGCTCATTCCCATTACTTTGCAGGCTT 39620 || ||| || ||| ||||| |||||||||| || ||||||||||| ||||||| Sbjct 11261 GAA--GCTCCTT-ATAGCGATAAAATGTATCTCTACTATAACCCATTACTTTACAGGCTT 11205 Query 39621 GAGAAATATTACCCAGTTCTTCTGCTAAATTTAATAAACC 39660 || | | | || | || |||||| || | |||||| || Sbjct 11204 ATGATACACTTCCTAATTGTTCTGCAAATTGTAATAAGCC 11165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159425403572160