Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_028898.1 Length=35764 Score E Sequences producing significant alignments: (Bits) Value seq123050 176 1e-39 seq90406 174 4e-39 seq336791 136 9e-28 seq348097 109 1e-19 >seq123050 Length=55999 Score = 176 bits (194), Expect = 1e-39 Identities = 464/699 (66%), Gaps = 17/699 (2%) Strand=Plus/Plus Query 24613 TATAAATTTTCTTCCTAAATGCCACTTGGTAAAATTCTTGTAAGATTGTTTTATGGAACC 24672 ||||||| || || | || || | | |||||||| | | | ||| |||| || Sbjct 13696 TATAAATCTTTTTACGGAAAGCTATATCATAAAATTCATCTTTTAAAGTTCTATGTAATT 13755 Query 24673 GTTCGCAGATGCCGTTAGTCTGCGGATGTTTTACCTTGGTTTTACTGTGTTCAATATCAT 24732 |||||| || || ||||| || ||| | |||| |||||| | || ||||||| | Sbjct 13756 TTTCGCATATTCCATTAGTTTGAGGAGAACGTGCCTTAGTTTTAGTATGATCAATATTTT 13815 Query 24733 TTATTGCTAAATAAAGCTCATAATCGTGATTTTCTACCTTGCCACAATATTCACTTCCTC 24792 ||| || ||||| | |||| || | |||| ||||||||| ||||||||||| |||||| Sbjct 13816 CTATAGCCAAATATAACTCAAAAGCATGATGTTCTACCTTACCACAATATTCCGTTCCTC 13875 Query 24793 GGTCAGTTAATATGCGTAACATCGGTAAACCTTGGCTTTCAAAGTATGGTAACACTTTAT 24852 || || | || | | | |||| | | || | | |||| | |||| || |||| Sbjct 13876 TATCTGTAAGGATTCTCAGTAGTGGTACATCATGATTATTAAAGAAAGGTATTACCTTAT 13935 Query 24853 CATTCAGCATATCCGCAGCACTGATAGCGGTCTTCATTGTATAAAGTTTTGCAAA-CGCC 24911 |||| | ||||| || | | || || | || ||||| || |||||||| ||| Sbjct 13936 CATTTAAAATATCAGCGGATGTTATTGCAGATTTATCAGTATAGAG-TTTGCAAATAGCC 13994 Query 24912 ACTTTACTGTAAGTATCAATAAACGTTTGTTGATAAATACGACCCACTCCTTTGAGGTTG 24971 ||| || ||||| |||||||| |||||||| || || | ||| |||||||| | || Sbjct 13995 ACTCTAGAATAAGTGTCAATAAAGGTTTGTTGGTATATTCTACCTACTCCTTTCATATTA 14054 Query 24972 CCCACATAGAAAGTATCTTGTGAGCCAAGATAGCCAGGGTGTGCCGTTTCAATTTCACCA 25031 || ||||| | || ||||||| |||||||| || || || || |||||||| ||| Sbjct 14055 CCGACATAATAGGTGTCTTGTGCACCAAGATAACCGGGATGCTGAGTATCAATTTCTCCA 14114 Query 25032 -CAGGCAATCTCATCTTCTTTCTTACGCTCTAAGGCTTGTACCTGTGTTTCACTGAGTAT 25090 || ||| | | | |||| ||||| || || ||| ||| | |||| Sbjct 14115 TGAGCTAATTTGTTTTGCTTT------TTCTAAAGCAGATATCTGCTCTTCTGTCAGTAA 14168 Query 25091 AATACCTTGTTCTGCAACCAGTT--TTTCCAGGGCGATTAATCTTTGCTTAAAATTGGCA 25148 ||||| | | |||| | || ||| | || | | || || ||| | | | || Sbjct 14169 GATACCGTCCTGTGCA--GATTTAGCTTCTAAAGCTTTGAGTCGTTTCTTTAGAGTTTCA 14226 Query 25149 AGATGATGACGTAACCAAATCGAACGTACACCTCCTGCTGAAACAAAGATGCCTTGTTTA 25208 |||| | |||| ||| || ||||||||||| | | ||| || | || ||||| || Sbjct 14227 AGATCGTTGCGTAGCCAGATAGAACGTACACCACTGGATGACACTATAATACCTTGCTTT 14286 Query 25209 CGGAGTTCGTTACTCACTCTTACCTGTCCAAATGCCGGGTTATCAAGAGCAAACTTCACA 25268 ||| | | ||| | | | ||| |||| || || || || | ||||| || | Sbjct 14287 ATTAGTGCTTGGCTCGCACGAAGCTGACCAAGAGCAGGATTCTCTATAGCAAGATTTATT 14346 Query 25269 ACAGCTTGCTCTAT-TG-CCTCATCAACACGATTTTTTA 25305 || ||||| ||||| || || || |||||||| |||| Sbjct 14347 ACTGCTTGTTCTATATGTTCTGAT--ACACGATTCTTTA 14383 Score = 176 bits (194), Expect = 1e-39 Identities = 464/699 (66%), Gaps = 17/699 (2%) Strand=Plus/Plus Query 24613 TATAAATTTTCTTCCTAAATGCCACTTGGTAAAATTCTTGTAAGATTGTTTTATGGAACC 24672 ||||||| || || | || || | | |||||||| | | | ||| |||| || Sbjct 21231 TATAAATCTTTTTACGGAAAGCTATATCATAAAATTCATCTTTTAAAGTTCTATGTAATT 21290 Query 24673 GTTCGCAGATGCCGTTAGTCTGCGGATGTTTTACCTTGGTTTTACTGTGTTCAATATCAT 24732 |||||| || || ||||| || ||| | |||| |||||| | || ||||||| | Sbjct 21291 TTTCGCATATTCCATTAGTTTGAGGAGAACGTGCCTTAGTTTTAGTATGATCAATATTTT 21350 Query 24733 TTATTGCTAAATAAAGCTCATAATCGTGATTTTCTACCTTGCCACAATATTCACTTCCTC 24792 ||| || ||||| | |||| || | |||| ||||||||| ||||||||||| |||||| Sbjct 21351 CTATAGCCAAATATAACTCAAAAGCATGATGTTCTACCTTACCACAATATTCCGTTCCTC 21410 Query 24793 GGTCAGTTAATATGCGTAACATCGGTAAACCTTGGCTTTCAAAGTATGGTAACACTTTAT 24852 || || | || | | | |||| | | || | | |||| | |||| || |||| Sbjct 21411 TATCTGTAAGGATTCTCAGTAGTGGTACATCATGATTATTAAAGAAAGGTATTACCTTAT 21470 Query 24853 CATTCAGCATATCCGCAGCACTGATAGCGGTCTTCATTGTATAAAGTTTTGCAAA-CGCC 24911 |||| | ||||| || | | || || | || ||||| || |||||||| ||| Sbjct 21471 CATTTAAAATATCAGCGGATGTTATTGCAGATTTATCAGTATAGAG-TTTGCAAATAGCC 21529 Query 24912 ACTTTACTGTAAGTATCAATAAACGTTTGTTGATAAATACGACCCACTCCTTTGAGGTTG 24971 ||| || ||||| |||||||| |||||||| || || | ||| |||||||| | || Sbjct 21530 ACTCTAGAATAAGTGTCAATAAAGGTTTGTTGGTATATTCTACCTACTCCTTTCATATTA 21589 Query 24972 CCCACATAGAAAGTATCTTGTGAGCCAAGATAGCCAGGGTGTGCCGTTTCAATTTCACCA 25031 || ||||| | || ||||||| |||||||| || || || || |||||||| ||| Sbjct 21590 CCGACATAATAGGTGTCTTGTGCACCAAGATAACCGGGATGCTGAGTATCAATTTCTCCA 21649 Query 25032 -CAGGCAATCTCATCTTCTTTCTTACGCTCTAAGGCTTGTACCTGTGTTTCACTGAGTAT 25090 || ||| | | | |||| ||||| || || ||| ||| | |||| Sbjct 21650 TGAGCTAATTTGTTTTGCTTT------TTCTAAAGCAGATATCTGCTCTTCTGTCAGTAA 21703 Query 25091 AATACCTTGTTCTGCAACCAGTT--TTTCCAGGGCGATTAATCTTTGCTTAAAATTGGCA 25148 ||||| | | |||| | || ||| | || | | || || ||| | | | || Sbjct 21704 GATACCGTCCTGTGCA--GATTTAGCTTCTAAAGCTTTGAGTCGTTTCTTTAGAGTTTCA 21761 Query 25149 AGATGATGACGTAACCAAATCGAACGTACACCTCCTGCTGAAACAAAGATGCCTTGTTTA 25208 |||| | |||| ||| || ||||||||||| | | ||| || | || ||||| || Sbjct 21762 AGATCGTTGCGTAGCCAGATAGAACGTACACCACTGGATGACACTATAATACCTTGCTTT 21821 Query 25209 CGGAGTTCGTTACTCACTCTTACCTGTCCAAATGCCGGGTTATCAAGAGCAAACTTCACA 25268 ||| | | ||| | | | ||| |||| || || || || | ||||| || | Sbjct 21822 ATTAGTGCTTGGCTCGCACGAAGCTGACCAAGAGCAGGATTCTCTATAGCAAGATTTATT 21881 Query 25269 ACAGCTTGCTCTAT-TG-CCTCATCAACACGATTTTTTA 25305 || ||||| ||||| || || || |||||||| |||| Sbjct 21882 ACTGCTTGTTCTATATGTTCTGAT--ACACGATTCTTTA 21918 >seq90406 Length=52800 Score = 174 bits (192), Expect = 4e-39 Identities = 264/373 (71%), Gaps = 2/373 (1%) Strand=Plus/Plus Query 24660 GTTTTATGGAACCGTTCGCAGATGCCGTTAGTCTGCGGATGTTTTACCTTGGTTTTACTG 24719 ||| | || || | |||||| || || ||||| || ||| | | || |||||| | Sbjct 184 GTTCTGTGTAATCTTTCGCATATTCCATTAGTTTGAGGAGAACGTGCTTTAGTTTTAGTA 243 Query 24720 TGTTCAATATCATTTATTGCTAAATAAAGCTCATAATCGTGATTTTCTACCTTGCCACAA 24779 || ||||||| | ||| || ||||| | |||| || | |||| |||||||||||||||| Sbjct 244 TGATCAATATTTTCTATAGCCAAATATAACTCAAAAGCATGATGTTCTACCTTGCCACAA 303 Query 24780 TATTCACTTCCTCGGTCAGTTAATATGCGTAACATCGGTAAACCTTGGCTTTCAAAGTAT 24839 || || |||||| || || | || | | | |||| | | || | | |||| | Sbjct 304 TACTCTGTTCCTCTATCTGTAAGGATTCTAAGTAGTGGTATATCATGATTATTAAAGAAA 363 Query 24840 GGTAACACTTTATCATTCAGCATATCCGCAGCACTGATAGCGGTCTTCATTGTATAAAGT 24899 |||| || |||||||| | ||||| |||| | || || | ||| ||||| || Sbjct 364 GGTATTACCTTATCATTTAAAATATCAGCAGATGTTATTGCAGACTTATCAGTATAGAG- 422 Query 24900 TTTGCAAA-CGCCACTTTACTGTAAGTATCAATAAACGTTTGTTGATAAATACGACCCAC 24958 |||||||| |||||| || ||||| |||||||| |||||||| || || | ||| || Sbjct 423 TTTGCAAATAGCCACTCTAGAATAAGTGTCAATAAAGGTTTGTTGGTATATTCTACCTAC 482 Query 24959 TCCTTTGAGGTTGCCCACATAGAAAGTATCTTGTGAGCCAAGATAGCCAGGGTGTGCCGT 25018 |||||| | || || |||||| | || ||||||| |||||||| ||||| || || Sbjct 483 TCCTTTCATATTACCGACATAGTAGGTGTCTTGTGCACCAAGATAACCAGGATGCTGAGT 542 Query 25019 TTCAATTTCACCA 25031 || ||||| ||| Sbjct 543 ATCGATTTCTCCA 555 Score = 174 bits (192), Expect = 4e-39 Identities = 264/373 (71%), Gaps = 2/373 (1%) Strand=Plus/Plus Query 24660 GTTTTATGGAACCGTTCGCAGATGCCGTTAGTCTGCGGATGTTTTACCTTGGTTTTACTG 24719 ||| | || || | |||||| || || ||||| || ||| | | || |||||| | Sbjct 48416 GTTCTGTGTAATCTTTCGCATATTCCATTAGTTTGAGGAGAACGTGCTTTAGTTTTAGTA 48475 Query 24720 TGTTCAATATCATTTATTGCTAAATAAAGCTCATAATCGTGATTTTCTACCTTGCCACAA 24779 || ||||||| | ||| || ||||| | |||| || | |||| |||||||||||||||| Sbjct 48476 TGATCAATATTTTCTATAGCCAAATATAACTCAAAAGCATGATGTTCTACCTTGCCACAA 48535 Query 24780 TATTCACTTCCTCGGTCAGTTAATATGCGTAACATCGGTAAACCTTGGCTTTCAAAGTAT 24839 || || |||||| || || | || | | | |||| | | || | | |||| | Sbjct 48536 TACTCTGTTCCTCTATCTGTAAGGATTCTAAGTAGTGGTATATCATGATTATTAAAGAAA 48595 Query 24840 GGTAACACTTTATCATTCAGCATATCCGCAGCACTGATAGCGGTCTTCATTGTATAAAGT 24899 |||| || |||||||| | ||||| |||| | || || | ||| ||||| || Sbjct 48596 GGTATTACCTTATCATTTAAAATATCAGCAGATGTTATTGCAGACTTATCAGTATAGAG- 48654 Query 24900 TTTGCAAA-CGCCACTTTACTGTAAGTATCAATAAACGTTTGTTGATAAATACGACCCAC 24958 |||||||| |||||| || ||||| |||||||| |||||||| || || | ||| || Sbjct 48655 TTTGCAAATAGCCACTCTAGAATAAGTGTCAATAAAGGTTTGTTGGTATATTCTACCTAC 48714 Query 24959 TCCTTTGAGGTTGCCCACATAGAAAGTATCTTGTGAGCCAAGATAGCCAGGGTGTGCCGT 25018 |||||| | || || |||||| | || ||||||| |||||||| ||||| || || Sbjct 48715 TCCTTTCATATTACCGACATAGTAGGTGTCTTGTGCACCAAGATAACCAGGATGCTGAGT 48774 Query 25019 TTCAATTTCACCA 25031 || ||||| ||| Sbjct 48775 ATCGATTTCTCCA 48787 >seq336791 Length=793321 Score = 136 bits (150), Expect = 9e-28 Identities = 365/554 (66%), Gaps = 8/554 (1%) Strand=Plus/Minus Query 24645 AATTCTTGTAAGATTGTTTTATGGAACCGTTCGCAGATGCCGTTAGTCTGCGGATGTTTT 24704 ||||||||| || ||||||| || || || || || ||||| || || ||| | | Sbjct 698254 AATTCTTGTTTCATGGTTTTATTAAAACGCTCACACATACCGTTTGTTTGGGGAGCATAT 698195 Query 24705 ACCTTGGTTTTACTGTGTTCAATATCATTTATTGCTAAATAA-AGCTCATAATCGTGATT 24763 |||| ||| || | ||||| ||| | | ||| ||||| || | |||| || |||||| Sbjct 698194 GCCTTAGTTGTAGTATGTTCTATACCTTCTAT-GCTAAGAAATAACTCAAAAGCGTGATG 698136 Query 24764 TTCTACCTTGCCACAATATTCACTTCCTCGGTCAGTTAATATGCGTAACATCGGTAAACC 24823 |||| || || |||||| ||| || || || | || || || || |||| || Sbjct 698135 CTCTATATTTCCCTTATATTCTGATCCACGATCTGTAAGAATACGAAATATTGGTATCCC 698076 Query 24824 TTGGCTTTCAAAGTATGGTAACACTTTATCATTCAGCATATCCGCAGCACTGATAGCGGT 24883 ||| || | |||||||||| ||||| |||||||| |||||| | ||||| || Sbjct 698075 TTGAGCCTCGTACCATGGTAACACGCGGTCATTAAGCATATCAGCAGCAGTAATAGCTGT 698016 Query 24884 CTTCATTGTATAAAGTTTTGCAAACGCCACTTTACTGTAAGTATCAATAAACGTTTGTTG 24943 || ||||| ||||| ||| ||| || || | ||| |||||||||| || Sbjct 698015 TTTATCAGTATATAGTTTAGCATCCGCTACCCTAGTATAACTATCAATAAATACCTGAGA 697956 Query 24944 ATAAATACGACCCACTCCTTTGAGGTTGCCCACATAGAAAGTATCTTGTGAGCCAAGATA 25003 ||||| ||| | ||||| | || || |||||| | ||||| || | || | ||| Sbjct 697955 ATAAACCTTACCTATACCTTTAAAATTTCCTACATAGTACGTATCCTGACATCCTAAATA 697896 Query 25004 GCCAGGGTGTGCCGTTTCAATTTCACCACAGGCAATCTCATCTTCTTTCTTACGCT---C 25060 || || || ||| ||||||| ||| || || | ||| || ||||| | Sbjct 697895 ACCTGGATGCTGTGTTGCAATTTCTCCATGAGCT---TCTTTTTCATTACGACGCTTCTC 697839 Query 25061 TAAGGCTTGTACCTGTGTTTCACTGAGTATAATACCTTGTTCTGCAACCAGTTTTTCCAG 25120 || |||||| ||| | |||| | || | |||||| | | || | | | ||| | Sbjct 697838 TAGTACTTGTAACTGAGCTTCAGTAAGAACAATACCATCCTGAGCCATCTTTGCTTCTAA 697779 Query 25121 GGCGATTAATCTTTGCTTAAAATTGGCAAGATGATGACGTAACCAAATCGAACGTACACC 25180 || | | |||| | | |||| | || || |||||||||||| || | || || Sbjct 697778 TGCTTTAAGCCTTTTACTGATATTGTTTAAATCATTACGTAACCAAATTGATCTCACTCC 697719 Query 25181 TCCTGCTGAAACAA 25194 ||| | ||| |||| Sbjct 697718 TCCAGGTGATACAA 697705 >seq348097 Length=12061 Score = 109 bits (120), Expect = 1e-19 Identities = 417/640 (65%), Gaps = 26/640 (4%) Strand=Plus/Minus Query 24830 TTCAAAGTATGGTAACACTTTATCATTCAGCATATCCGCAGCACTGATAGCGGTCTTCAT 24889 |||||| |||||| ||| |||||||||| || |||||| | |||| || ||| Sbjct 11791 TTCAAAAAATGGTATAACTCTATCATTCAGATGGTCTGCAGCAGTTATAGGTGTTTTCTC 11732 Query 24890 TGTATAAAGTTTTGCAAACGCCACTTTACTGTAAGTATCAATAAACGTTTGTTGATAAAT 24949 |||||||| || || || ||| | ||| || || | ||| |||||||||||||| Sbjct 11731 AGTATAAAGCTTACAAATAGCAACTCTTGAGTAGGTCTCTACAAAGGTTTGTTGATAAAT 11672 Query 24950 ACGACCCACTCCTTTGAGGTTGCCCACATAGAAAGTATCTTGTGAGCCAAGATAGCCAGG 25009 ||| || | |||| | || || || || |||||||||| || ||||| || |||| Sbjct 11671 ACGTCCTATGTCTTTAATATTTCCTACGTAATAAGTATCTTGAGATCCAAGGTAACCAGA 11612 Query 25010 GTGTGCCGTTTCAATTTCACCACAGGCAATCTCATCTTCTTTCTTACGCTCT-AAG-GCT 25067 | |||||||| || ||| || || | ||| ||| | || ||| ||| || Sbjct 11611 ACGCATGGTTTCAATCTCGCCAGTTGC-TTCAC-GCTTATTTTTGACTTTCTCAAGTGCG 11554 Query 25068 TGTACCTGTGTTTCACTGAGTATAATACCTTGTTCTGCAACCAGTTT---TTCCAGGGCG 25124 | | |||||| |||||||| ||||| || | | |||||| ||| ||||| | Sbjct 11553 TTAAGCTGTGTGTCACTGAGGATAATGCCATAATTTGCAAC---TTTAGCTTCCAAAGAT 11497 Query 25125 ATTAATCTTTGCTTAAAATTGGCAAGATGATGACGTAACCAAATCGAACGTACACCTCCT 25184 | | | || ||||||||| | |||| || ||| ||||| || | | | || || Sbjct 11496 TTCAGGCGTTTCTTAAAATTCTCTAGATCAT--TGTAGCCAAACAGATCTTGCGCCACCA 11439 Query 25185 GCTGAAACAAAGATGCCTTGTTTACGGAGTTCGTTA-CT---CACTCTT-ACCTGTCCAA 25239 | || | || || ||| || || | ||| ||| || | |||| ||| ||| Sbjct 11438 CCAGAGATAATAATACCTCTCTTCCGTAATTCATTAGCTGTACGTTCTTGACC---CCAT 11382 Query 25240 ATGCCGGGTTATCAAGAGCAAACTTCACAACAGCTTGCTCTATTGCCTCATCAACACGAT 25299 | || || |||| ||| | || || || | | ||| || || ||| ||| Sbjct 11381 AGGCAGGAAATTCAACAGCTATATTAACCACTGAATCCTCAATATTAGCAGGAACGTGAT 11322 Query 25300 TTTTTAAGTTGGGAACGCGTCTATTTTGATTCAGCAATGCTTCAACACCACCTTGCTC-- 25357 | || | | ||| ||| | | | ||| ||||| |||||||||| || Sbjct 11321 TCTTAACGCAGGGCTTTTTCCTACTCATCTCAAACAAAGCTTCTGCACCACCTTGTTCGT 11262 Query 25358 -AACCGCTTGTTGATAACGATAGAATGTATCTCGGCTCATTCCCATTACTTTGCAGGCTT 25416 || ||| || ||| ||||| |||||||||| || ||||||||||| ||||||| Sbjct 11261 GAA--GCTCCTT-ATAGCGATAAAATGTATCTCTACTATAACCCATTACTTTACAGGCTT 11205 Query 25417 GAGAAATATTACCCAGTTCTTCTGCTAAATTTAATAAACC 25456 || | | | || | || |||||| || | |||||| || Sbjct 11204 ATGATACACTTCCTAATTGTTCTGCAAATTGTAATAAGCC 11165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113821582094704