Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq266908 89.7 5e-13 seq8286 89.7 5e-13 seq329878 84.2 2e-11 >seq266908 Length=1092028 Score = 89.7 bits (98), Expect = 5e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 6547 CTCGATGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAAC 6606 ||| |||||||| ||||| || || ||||| || || | || || | || ||||| Sbjct 125358 CTCCATGTGGTTAAGGTAAATGTGGGCATCGCCTAAATTGTGAACAAATTCACCAGGTCG 125417 Query 6607 CAACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGG 6666 || || | || ||||||| ||||| ||||||||||| |||||||| ||||| Sbjct 125418 TTTTCCAGTCACCTTTGCCATCATGTGTGTGAGAAGAGCGTAACTCGCAATGTTAAACGG 125477 Query 6667 CACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGC 6726 || || || |||||||| | || || ||||| | || || || ||||| ||| | Sbjct 125478 TACACCCAATCCCATGTCGGCAGAACGCTGATACAATTGACACGAGAGCTCATCATCGTC 125537 Query 6727 GACGTAGAATTG 6738 |||||||| || Sbjct 125538 TACGTAGAACTG 125549 Score = 89.7 bits (98), Expect = 5e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34607 CAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATG 34666 || |||||||| | ||| ||||| || || || | ||||| || || | |||||| Sbjct 125549 CAGTTCTACGTAGACGATGATGAGCTCTCGTGTCAATTGTATCAGCGTTCTGCCGACATG 125490 Query 34667 GGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCAT 34726 || || || || ||||| |||||||| ||||||||||| ||||| ||||||| || | Sbjct 125489 GGATTGGGTGTACCGTTTAACATTGCGAGTTACGCTCTTCTCACACACATGATGGCAAAG 125430 Query 34727 GTCGTGGGGTTGGTTCCTGGGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTG 34786 || || ||||| || | || || | || || ||||| || || ||||| Sbjct 125429 GTGACTGGAAAACGACCTGGTGAATTTGTTCACAATTTAGGCGATGCCCACATTTACCTT 125370 Query 34787 AACCACATCGAG 34798 |||||||| ||| Sbjct 125369 AACCACATGGAG 125358 >seq8286 Length=1257 Score = 89.7 bits (98), Expect = 5e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 6547 CTCGATGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAAC 6606 ||| | |||||| ||||| || || ||||| || || | || || | || ||||| Sbjct 436 CTCCACGTGGTTAAGGTAAATGTGGGCATCGCCTAAATTGTGAACAAATTCACCAGGTCG 495 Query 6607 CAACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGG 6666 || || | || ||||||| ||||| ||||||||||| |||||||| ||||| Sbjct 496 TTTTCCAGTCACCTTTGCCATCATGTGTGTGAGAAGAGCGTAACTCGCAATGTTAAACGG 555 Query 6667 CACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGC 6726 || || || |||||||| | || || ||||| || || || || ||||| ||| | Sbjct 556 TACACCCAATCCCATGTCGGCAGAACGCTGATACAGTTGACACGAGAGCTCATCATCGTC 615 Query 6727 GACGTAGAATTG 6738 |||||||| || Sbjct 616 TACGTAGAACTG 627 Score = 89.7 bits (98), Expect = 5e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34607 CAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATG 34666 || |||||||| | ||| ||||| || || || || ||||| || || | |||||| Sbjct 627 CAGTTCTACGTAGACGATGATGAGCTCTCGTGTCAACTGTATCAGCGTTCTGCCGACATG 568 Query 34667 GGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCAT 34726 || || || || ||||| |||||||| ||||||||||| ||||| ||||||| || | Sbjct 567 GGATTGGGTGTACCGTTTAACATTGCGAGTTACGCTCTTCTCACACACATGATGGCAAAG 508 Query 34727 GTCGTGGGGTTGGTTCCTGGGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTG 34786 || || ||||| || | || || | || || ||||| || || ||||| Sbjct 507 GTGACTGGAAAACGACCTGGTGAATTTGTTCACAATTTAGGCGATGCCCACATTTACCTT 448 Query 34787 AACCACATCGAG 34798 |||||| | ||| Sbjct 447 AACCACGTGGAG 436 >seq329878 Length=295997 Score = 84.2 bits (92), Expect = 2e-11 Identities = 125/171 (73%), Gaps = 6/171 (4%) Strand=Plus/Plus Query 34394 GGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGG 34453 || ||| | ||||||||||| || ||||||||||| |||||||| || || ||| Sbjct 98849 GGAGACCTTGGCCCGGTCTATGGATTCCAGTGGAGGCACTTTGGAGCTCCTTACCGGACC 98908 Query 34454 A-GCGAAGCGGACTATTCGG-GAC-AGGGAGCGGACCAGCTGCAGTACGTGATCGACACC 34510 | ||| | ||||||| ||| ||| |||| | ||||||| | || || ||||||| ||| Sbjct 98909 ATGCGCA-CGGACTA--CGGAGACGAGGGTGTGGACCAGATCAAGAACCTGATCGAGACC 98965 Query 34511 TTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCG 34561 | ||| ||||| ||||| | ||||| | | ||| | ||||||||| Sbjct 98966 ATCAAGACCAACCCCAATGACCGCAGGATGATTCTCTGCTCCTGGAACCCG 99016 Score = 84.2 bits (92), Expect = 2e-11 Identities = 125/171 (73%), Gaps = 6/171 (4%) Strand=Plus/Minus Query 6784 CGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGAT 6843 ||||||||| | ||| | | ||||| | ||||| ||||| ||| | ||| ||||| Sbjct 99016 CGGGTTCCAGGAGCAGAGAATCATCCTGCGGTCATTGGGGTTGGTCTTGATGGTCTCGAT 98957 Query 6844 CACGTACTGCAGCTGGTCCGCTCCCT-GTC-CCGAATAGTCCGCTTCGC-TCCCCCGATA 6900 || || || | ||||||| | |||| ||| ||| ||||||| | ||| | ||| || Sbjct 98956 CAGGTTCTTGATCTGGTCCACACCCTCGTCTCCG--TAGTCCG-TGCGCATGGTCCGGTA 98900 Query 6901 CTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCC 6951 || |||||||| ||||||||||| || ||||||||||| | ||| || Sbjct 98899 AGGAGCTCCAAAGTGCCTCCACTGGAATCCATAGACCGGGCCAAGGTCTCC 98849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 446192032866240