Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq118272 84.2 2e-11 >seq118272 Length=246527 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/234 (68%), Gaps = 10/234 (4%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| || ||||| || || || ||||| || || | || ||||| || Sbjct 51235 AATGCAAATCTTCGTGAAGACCCTGACGGGGAAGACCATCACCCTGGAGGTCGAGCCCAG 51294 Query 27849 CGACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATG 27903 |||| || |||| ||||| || || ||||| ||||| |||| | Sbjct 51295 CGAC-----ACCATCGAGAACGTCAAGGCTAAGATCCAGGACAAGGAAGGCATTCCCCCG 51349 Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || ||||| || | || ||||| ||||| || ||||| || | || | | |||||||| Sbjct 51350 GACCAGCAGCGTCTCATCTTTGCTGGAAAGCAGTTGGAAGATGGCCGAACCCTGTCCGAT 51409 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||||||||||||| ||| ||| | || | || ||||| | ||||| ||| Sbjct 51410 TACAACATCCAAAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTCCGTGGTGGC 51463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354259886223084