Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq118272 105 6e-18 >seq118272 Length=246527 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| ||||| || || ||||||| || ||||| | || || | ||| Sbjct 51438 TGGAGGGTGGACTCCTTTTGGATGTTGTAATCGGACAGGGTTCGGCCATCTTCCAACTGC 51379 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 || || ||||| || |||||||||||||| | ||| | || || |||||| ||| || Sbjct 51378 TTTCCAGCAAAGATGAGACGCTGCTGGTCCGGGGGAATGCCTTCCTTGTCCTGGATCTTA 51319 Query 39202 TGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTC 39261 |||| || | | || ||||| | ||| || |||| ||||| | || |||||| Sbjct 51318 GCCTTGACGTTCTCGATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGTCTTCCCCGTC 51259 Query 39262 AGCGTTTTAACAAAGATTTGCAT 39284 || || || || ||||||||||| Sbjct 51258 AGGGTCTTCACGAAGATTTGCAT 51236 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||| || || ||| |||||| || ||||| ||||| | || ||||| | || || Sbjct 50304 ACCAGGTGAAGGGTGGACTCTTTCTGGATATTGTAATCCGACAGGGTTCGGCCATCTTCG 50245 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| ||||| ||||| || ||||||||||| |||| || | || || |||||| Sbjct 50244 AGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGA 50185 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 ||||| || | || | | || ||||| | |||||| |||| ||||| | || Sbjct 50184 ATTTTGGCCTTCACGTTCTCGATTGTGTCGCTGGGCTCCACCTCCAGTGTGATTGTCTTA 50125 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || || ||||| || ||||| ||||| Sbjct 50124 CCGGTGAGGGTTTTGACGAAGATCTGCAT 50096 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| ||| || || |||||| || || || || || | || || || | || || Sbjct 50761 CACCAGATGGAGGGTAGACTCTTTCTGGATGTTGTAGTCCGACAGGGTGCGACCATCTTC 50702 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| ||||| || ||||||||||| |||| || | | || |||||| Sbjct 50701 GAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCGGGAGGAATACCTTCCTTGTCCTG 50642 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 |||||| || | || | | ||| || || | |||||| |||| |||||| | || Sbjct 50641 AATTTTCGCCTTCACGTTCTCGATCGTGTCACTGGGCTCCACCTCCAGTGTGATAGTCTT 50582 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || ||||| || ||||| ||||| ||||| Sbjct 50581 GCCGGTCAGAGTCTTAACGAAGATCTGCAT 50552 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||| | ||| || ||| |||||| || || || || || | || || || |||| || Sbjct 50989 CACAAGATGAAGGGTGGACTCTTTCTGGATGTTGTAGTCTGACAGCGTGCGGCCGTCCTC 50930 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 || |||||||| || || || |||||||||||||| | || | || ||| ||||| Sbjct 50929 GAGTTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGTGGAATGCCCTCCTTGTCTTG 50870 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| || |||| | | | ||||| || | ||| || || | ||||| | || Sbjct 50869 GATCTTTGCCTTGACGTTTTCGATGGTATCACTGGGCTCAACTTCGAGGGTGATGGTCTT 50810 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || ||||| || || |||||||||||||| Sbjct 50809 GCCGGTCAGAGTCTTTACAAAGATTTGCAT 50780 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||| || || ||| |||||| || || || || |||| || || || |||| || Sbjct 50076 ACCAGGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCCTCG 50017 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 || || ||||| || || || ||||||||||| || | ||| | | ||| |||||| | Sbjct 50016 AGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCCGGGGGGATTCCCTCCTTGTCCTGG 49957 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 ||||| || | | | | ||| ||||||| ||| || || | |||||| | || Sbjct 49956 ATTTTGGCCTTCACGTTTTCGATCGTGTCGCTCGGCTCAACCTCGAGCGTGATCGTCTTG 49897 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || || || || ||||| || ||||| Sbjct 49896 CCAGTGAGGGTCTTGACAAAAATCTGCAT 49868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427611277234196