Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq118272 136 3e-27 >seq118272 Length=246527 Score = 136 bits (150), Expect = 3e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| ||||||||||| || ||||| ||||| || ||||| || ||| Sbjct 50324 ATGCAGATCTTCGTCAAAACCCTCACCGGCAAAACCATCACGCTGGAAGTCGAGCCCAGT 50383 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| | ||| ||||| ||||| ||||| | || || ||||| Sbjct 50384 GACACAATTGAAAATGTCAAAGCCAAAATCCAGGACAAGGAAGGGATCCCCCCGGATCAG 50443 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||||| || || |||||||| ||||| ||||| | ||||| | || |||||| Sbjct 50444 CAGCGTTTGATCTTCGCCGGCAAGCAACTCGAAGATGGCCGCACCCTGTCGGACTACAAC 50503 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || || || |||||||| |||| || ||| Sbjct 50504 ATCCAGAAGGAGTCCACCCTACACTTGGTT 50533 Score = 113 bits (124), Expect = 3e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || |||||||| || || |||||||| ||||| ||||| | | Sbjct 49868 ATGCAGATTTTTGTCAAGACCCTCACTGGCAAGACGATCACGCTCGAGGTTGAGCCGAGC 49927 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | || ||||| ||||| || || | || || ||||| Sbjct 49928 GACACGATCGAAAACGTGAAGGCCAAAATCCAGGACAAGGAGGGAATCCCCCCGGATCAG 49987 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || |||||||| ||||| || |||| || || | ||| |||||| Sbjct 49988 CAGCGTCTGATCTTCGCCGGCAAGCAACTCGAGGACGGCCGTACCCTCTCCGACTACAAC 50047 Query 23791 ATACAAAAAGAGTCCAC 23807 || || ||||||||||| Sbjct 50048 ATCCAGAAAGAGTCCAC 50064 Score = 107 bits (118), Expect = 1e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| ||||||||||| || || || ||||| || || || || ||| Sbjct 50096 ATGCAGATCTTCGTCAAAACCCTCACCGGTAAGACAATCACACTGGAGGTGGAGCCCAGC 50155 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || |||||| ||||| ||||| | || || ||||| Sbjct 50156 GACACAATCGAGAACGTGAAGGCCAAAATTCAGGACAAGGAAGGCATTCCTCCCGATCAG 50215 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||||||||| || || ||||| | || || | |||||||| Sbjct 50216 CAGCGTCTGATCTTTGCCGGCAAGCAGCTCGAAGATGGCCGAACCCTGTCGGATTACAAT 50275 Query 23791 ATACAAAAAGAGTCCAC 23807 || || ||||||||||| Sbjct 50276 ATCCAGAAAGAGTCCAC 50292 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || || || || || || || ||||| ||||||||||| ||| Sbjct 50780 ATGCAAATCTTTGTAAAGACTCTGACCGGCAAGACCATCACCCTCGAAGTTGAGCCCAGT 50839 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | |||| | || ||| || ||||| || || | || || || || Sbjct 50840 GATACCATCGAAAACGTCAAGGCAAAGATCCAAGACAAGGAGGGCATTCCACCTGACCAG 50899 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || |||||||||||||| || |||| ||||| | || |||||| Sbjct 50900 CAGCGTCTCATCTTCGCCGGCAAACAACTCGAGGACGGCCGCACGCTGTCAGACTACAAC 50959 Query 23791 ATACAAAAAGAGTCCAC 23807 || || ||||||||||| Sbjct 50960 ATCCAGAAAGAGTCCAC 50976 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || ||||| || || || || || || |||||||| || || ||| Sbjct 51008 ATGCAAATTTTTGTAAAAACTCTGACCGGCAAGACCATTACTCTCGAGGTCGAGCCCAGT 51067 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | ||| || || ||||| ||||| | || || || ||| Sbjct 51068 GACACCATCGAAAACGTGAAAGCCAAGATCCAGGACAAGGAAGGGATTCCTCCGGACCAA 51127 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||||||||| || || || |||| || || | || |||||| Sbjct 51128 CAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAGGACGGTCGTACCCTGTCGGACTACAAC 51187 Query 23791 ATACAAAAAGAGTCCAC 23807 || || ||||| ||||| Sbjct 51188 ATCCAGAAAGAATCCAC 51204 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || ||||| || ||||| ||||| || || ||||| || || || || ||| Sbjct 51235 AATGCAAATCTTCGTGAAGACCCTGACGGGGAAGACCATCACCCTGGAGGTCGAGCCCAG 51294 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || | | || || || ||||| ||||| | || || || || Sbjct 51295 CGACACCATCGAGAACGTCAAGGCTAAGATCCAGGACAAGGAAGGCATTCCCCCGGACCA 51354 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||| || || || ||||||| | || || | ||||||||| Sbjct 51355 GCAGCGTCTCATCTTTGCTGGAAAGCAGTTGGAAGATGGCCGAACCCTGTCCGATTACAA 51414 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||||| |||||||| Sbjct 51415 CATCCAAAAGGAGTCCAC 51432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 336487480661936