Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq8286 111 1e-19 seq266908 102 7e-17 seq16628 102 7e-17 seq329878 100 2e-16 >seq8286 Length=1257 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 29654 TCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCT 29713 |||||||||| |||||| | ||| ||||| || | |||| ||||| || || ||| | Sbjct 437 TCCACGTGGTTAAGGTAAATGTGGGCATCGCCTAAATTGTGAACAAATTCACCAGGTCGT 496 Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || || | |||||||||| ||||| |||| ||| || || |||||||| || Sbjct 497 TTTCCAGTCACCTTTGCCATCATGTGTGTGAGAAGAGCGTAACTCGCAATGTTAAACGGT 556 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || | |||||||| | || | ||| || || || ||||||||||| | ||| Sbjct 557 ACACCCAATCCCATGTCGGCAGAACGCTGATACAGTTGACACGAGAGCTCATCATCGTCT 616 Query 29834 ACGTAAAACTG 29844 ||||| ||||| Sbjct 617 ACGTAGAACTG 627 >seq266908 Length=1092028 Score = 102 bits (112), Expect = 7e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 29654 TCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCT 29713 |||| ||||| |||||| | ||| ||||| || | |||| ||||| || || ||| | Sbjct 125359 TCCATGTGGTTAAGGTAAATGTGGGCATCGCCTAAATTGTGAACAAATTCACCAGGTCGT 125418 Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || || | |||||||||| ||||| |||| ||| || || |||||||| || Sbjct 125419 TTTCCAGTCACCTTTGCCATCATGTGTGTGAGAAGAGCGTAACTCGCAATGTTAAACGGT 125478 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || | |||||||| | || | ||| || | || ||||||||||| | ||| Sbjct 125479 ACACCCAATCCCATGTCGGCAGAACGCTGATACAATTGACACGAGAGCTCATCATCGTCT 125538 Query 29834 ACGTAAAACTG 29844 ||||| ||||| Sbjct 125539 ACGTAGAACTG 125549 >seq16628 Length=231947 Score = 102 bits (112), Expect = 7e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 29654 TCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCT 29713 |||||||||| |||||| | ||| ||||| || | |||| ||||| || || ||| | Sbjct 230583 TCCACGTGGTTAAGGTAAATGTGGGCATCGCCTAAATTGTGAACAAATTCACCAGGTCGT 230642 Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || || | |||||||||| ||||| |||| ||| || || |||||||| || Sbjct 230643 TTTCCAGTCACCTTTGCCATCATGTGTGTGAGAAGAGCGTAACTCGCAATGTTAAACGGT 230702 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || | ||||| || | || | ||| || | || ||||||||||| | ||| Sbjct 230703 ACACCCAATCCCATATCGGCAGAACGCTGATACAATTGACACGAGAGCTCATCATCGTCT 230762 Query 29834 ACGTAAAACTG 29844 ||||| ||||| Sbjct 230763 ACGTAGAACTG 230773 >seq329878 Length=295997 Score = 100 bits (110), Expect = 2e-16 Identities = 106/139 (76%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 29647 CAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCC 29706 ||||| |||||||||| ||||||| ||| || || ||||||||||| ||||| || || Sbjct 113623 CAGCG--TCCACGTGGTTGAGGTAGATGTGGGCGTCCCCCAGGGTGTGCACAAAGTCCCC 113566 Query 29707 CGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTT 29766 || | |||||| || | |||| ||||| || ||||| | ||||||||| ||||| Sbjct 113565 GGGCCGTTTCCCGGTCACCTTGGCCACCATGTGGGTCAGGAGGGCGTAGCTGGCAATGTT 113506 Query 29767 AAAGGGCACCCCGAGCCCC 29785 || ||||| || || ||| Sbjct 113505 GAAAGGCACGCCCAGGCCC 113487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404334172477912