Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq16628 713 0.0 >seq16628 Length=231947 Score = 713 bits (790), Expect = 0.0 Identities = 1495/2209 (68%), Gaps = 52/2209 (2%) Strand=Plus/Plus Query 76803 GCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAA 76862 || ||||| || |||| ||| ||||| |||||||| || || || |||| || | ||| Sbjct 198645 GCAGGTTTGGTTCGTAAATAATACATTCCAGTTTTCAGTCCAAGTTTCCAACCACAAAAA 198704 Query 76863 TGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTT 76922 ||||| ||||| ||||| ||| | || | || || || ||||||| || |||||| Sbjct 198705 TGCATACTTGTAAGTTTTCCATACGTTGGCTGAGCGATGTGTATATTCAGTGATTGACTT 198764 Query 76923 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCC 76982 || || | ||||||||| | ||| |||| ||||| | ||| |||| |||| ||||||| Sbjct 198765 TGGTCCACGAAAGCTCCGCGATCTGCCGACATTTCCAAAATATTCTTCTGAGAAATTTCC 198824 Query 76983 CAAATAGTTTTGAA-AACTTGTTTGATATCATCTGGAAGGTTTGTATTTTGAATGGAACC 77041 || | ||| | ||| | ||| || || | || | || ||||||| ||||| Sbjct 198825 CACACAGTGCGATACAACATTTTTAAT-TCTTTAGGTATATTCAGCTTTTGAACAGAACC 198883 Query 77042 ACCATCTGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCT---CTCTGTTAA 77098 | | | || | | ||| |||| | || ||||| || || | | || || Sbjct 198884 ATTGTTAGCAATCAGTTCATTTTTTAAGTTGTCGTTCCATAAA--CCGAGACGC-GTCAA 198940 Query 77099 AACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTA 77158 | || | | |||||| |||| ||||| |||||||||||||| | ||| | ||||| || Sbjct 198941 ATCTTTCAAGAGATGGTGATTTACTATCTGAAATTCTCCAGAAAGTACGCGCCGAGTATA 199000 Query 77159 AATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGC 77218 | ||| || || |||||||||| | || || || || | ||| || |||||||| || Sbjct 199001 CACATTGCTAGTGTATGGTTCCATTGCCTCGTTATTACCAAGAATCTGCGCAGTAGATGC 199060 Query 77219 AGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTT 77278 |||||||| ||||| || | | |||||| | || ||| || | ||| | ||||| Sbjct 199061 TGTTGGCATTGGTGCTACGAGAAGACTATTGCGGATTCCAAAGCTTTTAATTCTTTCTTT 199120 Query 77279 TAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAAT 77338 || | ||||||||| || | ||||||| |||| ||| | |||||| || || || Sbjct 199121 TAAAGCAGACCAATCCCACAGGTTTGAAGGTGTTACATTCCACATATCGTACTGAAGGAT 199180 Query 77339 TCC----GTTACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTA 77394 ||| | |||| | || ||| || || || || || || ||| || | Sbjct 199181 TCCTTGTGATACTGGACTA----CCAGGGTACGTCTCGTACGGACCAAACTTTTTAGACA 199236 Query 77395 GTTCACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGAT 77454 ||||||||||| ||||||| ||||| ||||| |||||||| || || |||||||| | | Sbjct 199237 GTTCACAACTCTCTTCCAAAGCTCCATAATATATTGTTTCAAAGATTTTCTTATTAATTT 199296 Query 77455 CTTGTGCTTCAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCT 77514 | ||||| || || || ||| ||| | ||| || || || || || || | Sbjct 199297 CACAAGCTTCGTCACAGTCGAAAGGAAGTCTTAATAAAATGAAAGCGTCGGCCAAACCTT 199356 Query 77515 GAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGAT 77574 | ||||| || |||||||| | ||| | | | || |||| ||| ||||| ||||| |||| Sbjct 199357 GGACTCCGATTCCAATAGGGCGATGCCGCATGTTTGAAAGTTTCGCTTCGGGAATTGGAT 199416 Query 77575 AATAATTAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTA 77634 ||||||||| || || |||||||| | |||||| || ||| || || | | Sbjct 199417 AATAATTAACATCGATTATTTTATTCAAGTTTCTAGTTACGACTCTAGTTACTTGACGCA 199476 Query 77635 GTTTAAGAAAATCAAATCTTCCATCTATAACAAACATGTTCAAAGCTATAGATGCTAGAT 77694 ||| |||||| || ||||| ||| || |||||||| || || |||| || Sbjct 199477 ATTTTTCAAAATCGAAGTGTCCATGATAAACGAATCGATTCAAAGCAATCGACGCTAAAT 199536 Query 77695 TACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTAC 77754 |||| || || ||||| | | || | || | || || ||||||||||||||||||| Sbjct 199537 TACACACGGCAACCTCGTCAACGGACGTGTACTCTACGATTTCGGTACATAGATTACTAC 199596 Query 77755 ATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAA 77814 |||| || || || | |||| ||| || ||| ||||||| | ||| || || | | Sbjct 199597 ATTTTATTGTACCGACGTTTTTTTGATTCGATTTTCTATTGCAGGCGTCTTTGTATAACA 199656 Query 77815 TAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTT 77874 || | || || || ||||| | |||||||||||||| | ||||| || | Sbjct 199657 TATATGGCGTACCAGTTTCCGTTTGTGATTCGATAATTGCACTCCAG--------AGTTG 199708 Query 77875 TTAT-CATAGATTTG-------TATCGCCTCTCTCTTTCATATTGAGTATATAGCCGTTC 77926 || | || | ||| || || |||| | || ||| || || || ||| Sbjct 199709 TTGTGCACGAACTTGACGCCGATAACGTTTCTCCGTCTCGTATCGAACGTAAAGTTTTTC 199768 Query 77927 AAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCA 77986 || || || || | ||||| | || ||| | ||| | ||| |||||||| ||||| Sbjct 199769 GAAGTCTTCGCCGTATACATCTTGCAGGTGAGGACTTTCGTGTGGACACATCAACGACCA 199828 Query 77987 GTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAG 78046 |||||||| | || | |||||| || | ||| || ||||| | | | ||| || Sbjct 199829 TATTCCATCTTCTTCCACCCTTTTCATGAATAAATCGGGAATCCACAAACCGTAAAAAAG 199888 Query 78047 ATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAAT 78106 ||| || | ||| ||||| || || ||||| ||||| ||||| | ||| || | | Sbjct 199889 ATCACGTGCCCTACTCTCTTCTTTACCGGTATTTTTTTTTAGATCCAAAAAATCGAACAC 199948 Query 78107 ATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTG 78166 ||| | ||||| ||||| ||||| || || || |||| |||| ||| || || ||||| Sbjct 199949 ATCTGCGTGCCACGGTTCCAGATAGATGGCGATCGCTCCCGGTCTTTTGTTGCCACCCTG 200008 Query 78167 ATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGT 78226 ||| | || | || ||||| ||||| |||| | ||| || | ||||||||| ||||| Sbjct 200009 ATCGACGTAACGTGCCGTGTTGTTATACACTCGTAGCATGGGTACAATACCGTTCGATGT 200068 Query 78227 TCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTAT 78286 ||||||||||| | || ||||||||| || ||||| || ||| || ||||| Sbjct 200069 ACCATTTGTTCCTGCTATGTAACTTCCAGAAGCACGAATGTTGTGTATGTTAATTCCTAT 200128 Query 78287 TCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTAT 78346 ||| || ||| || || || || || || |||||| ||||||||| || || ||||| Sbjct 200129 TCCACCAGCCGATTTTGAAATGAGTGCACACTGTTTCAGTGTATCGTATATTCCTTCTAT 200188 Query 78347 ACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGC 78406 || || || |||| | | | |||||| || |||| ||| | | | ||| || || Sbjct 200189 GCTATCGTCTTTCATTTGCAATAAAAAACAACTCGACAGTTGCGGTTTAGGAGTCCCAGC 200248 Query 78407 ATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTC 78466 || || | ||| |||||||| |||||||||||||||||||| | || ||||| ||||| Sbjct 200249 GTTGAAAAGTGTGGGAGATGCTTGCGTAAACCATTTTTCAGACATGAGGTTGTACGTTTC 200308 Query 78467 AATAG--CTGATTCTAT-GTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATG 78523 ||| | ||| | || ||||| ||||| || | || || ||||| | ||| || Sbjct 200309 AATCGCACTGCTAAGATCGTCCC---CGTGAATGCCAATCGAAACGCGCATAAGCATGTG 200365 Query 78524 CTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTT 78583 || || | || || || ||| || || | || | | |||||| || || Sbjct 200366 TTGTGGCCGCTCTACAACTTTCCCATTAATCTTGAGTAAATGCGCACGTTCCAATGTCTT 200425 Query 78584 AAAACCAAAATAGTTGTA--TGAAAAGTCTCTCTCGTAAATAATAACAGAATTTAGTTTA 78641 ||| ||||| ||||| || ||||| || | ||||||| || || |||| | Sbjct 200426 AAATCCAAAGTAGTTATAATTGAAA--TCGCGATCGTAAACGATGGACGAGTTTAAAAAA 200483 Query 78642 TCTTTGTATTTGGTAACAATATCCATGACAGTAGTTG-AAATAATAGG---AGATCGTAC 78697 ||| | || |||| || | || | | | ||| || || |||| | | Sbjct 200484 TCTGCATTATTCATAACGATCT-TATATGTTTCTTCGCTAATCATGGGCGTAGATTTTCC 200542 Query 78698 ACCATTTTTAGGATTAACATAGTTAAATAAATCTTCCATTACATCACTAAATAGtttttt 78757 | ||| | ||| |||| | | ||||||| ||| || || ||||| | ||||| Sbjct 200543 GTTAGTTTCA--TTTACCATA-TGATATAAATCAGTCATCACCTCGCTAAAAACCTTTTT 200599 Query 78758 tGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATAGCATAATCAGGATG 78817 ||||| ||||||| |||||| | || | || || |||||||| ||||| || || || Sbjct 200600 CGTTTCTTTGTGTAAATTAGAAATGGCGAGTCGCGCTGCTAGAATGGCATAGTCTGGGTG 200659 Query 78818 TTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATCTAACTCTATAGTTGTGAC 78877 || ||||| || || || ||||||| |||||| |||| | || | || || || Sbjct 200660 TTTCGTAGTCATCGTTGCAGCAGTTTCTGCTGCTAAATTATCCAGTTCCACTGTCGTTAC 200719 Query 78878 CCCATTATATAGTCCTTGAATAACTTTCATGGCGATTTTGACA-GGATCTACAAACTCAG 78936 || ||||| ||| || ||||| ||| | || ||| |||||||| || || | Sbjct 200720 GCCTGGATATAATCCGACGATCACTTT-TTGGGTAATTACACAGGGATCTACGAAATCTG 200778 Query 78937 TGTTCAATCCATAACATAATTTTCTAATACGAGATGTGATTTTATCAAA 78985 |||||| |||||||| | ||| ||||| ||||| || ||||| || || Sbjct 200779 TGTTCAGCCCATAACAAAGTTTACTAATGCGAGACGTTATTTTGTCGAA 200827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691460367946880