Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq53415 318 6e-82 seq309614 315 7e-81 seq171808 282 4e-71 seq358428 152 5e-32 >seq53415 Length=1232 Score = 318 bits (352), Expect = 6e-82 Identities = 231/265 (87%), Gaps = 3/265 (1%) Strand=Plus/Minus Query 8344 TCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCG 8403 |||| |||||| | ||||||||||||||| |||| |||| || |||||| ||||||||| Sbjct 651 TCTCGCTCTGTCGTCCAGGCTGGAGTGCAATGGCATGATTTCTGCTCACCGCAACCTCCA 592 Query 8404 CCTCCCGGGTTCAAGCTATTCTCCTGCCTC--AGCCTCCAGAGTAGCTGGGATTACAGGC 8461 |||||| ||||||||| |||| ||||||| ||||||| |||||||||||| ||||||| Sbjct 591 CCTCCCAGGTTCAAGCAATTCCTCTGCCTCTCAGCCTCCGGAGTAGCTGGGACTACAGGC 532 Query 8462 AAAAGCCACCACGCCAAGCTAATTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTT 8521 | ||||||| | |||||||||||||||||| ||||||| ||||||||||||||| Sbjct 531 ATGCACCACCACACTCGGCTAATTTTTGTATTTTTGGTAGAGAT-GGGTTTCACCATGTT 473 Query 8522 GGCCAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGT 8581 |||||||||||||||||||||||||| ||| ||||||| |||||||| ||||||||||| Sbjct 472 GGCCAGGCTGGTCTCGAACTCCTGACTTCAGGTGATCCGCCTGCCTCAGCCTCCCAAAGC 413 Query 8582 GCTGGGATTACAGGCATGAGCCACC 8606 |||||||||| |||||||||||||| Sbjct 412 GCTGGGATTAAAGGCATGAGCCACC 388 >seq309614 Length=1332 Score = 315 bits (348), Expect = 7e-81 Identities = 228/264 (86%), Gaps = 0/264 (0%) Strand=Plus/Plus Query 8352 TGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGCCTCCCGG 8411 ||||||||||| ||||||||| |||| |||||| ||| ||||||||| | ||||||| | Sbjct 654 TGTTGCCCAGGTTGGAGTGCAATGGCATGATCTTGGCTTACTGCAACCACTGCCTCCCAG 713 Query 8412 GTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAGCCACC 8471 ||||||| |||||||||||||||||||| ||||||||||| |||| | | ||||| Sbjct 714 GTTCAAGTGATTCTCCTGCCTCAGCCTCCTAAGTAGCTGGGACTACATGTGTACACCACC 773 Query 8472 ACGCCAAGCTAATTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGCCAGGCTG 8531 | ||| |||| |||||||||||||||||||||| |||||| ||||||||||||||||| Sbjct 774 ATGCCCAGCTGATTTTTGTATTTTTAGTAGAGACGGGGTTTTGCCATGTTGGCCAGGCTG 833 Query 8532 GTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTA 8591 |||||||||||||||| ||| |||||||||| ||||||||||||||||||| |||||||| Sbjct 834 GTCTCGAACTCCTGACATCAGGTGATCCACCAGCCTCGGCCTCCCAAAGTGTTGGGATTA 893 Query 8592 CAGGCATGAGCCACCGCGCCTGGC 8615 ||| | |||||||||| || ||| Sbjct 894 CAGTCGAGAGCCACCGCACCCGGC 917 >seq171808 Length=1379 Score = 282 bits (312), Expect = 4e-71 Identities = 228/275 (83%), Gaps = 7/275 (3%) Strand=Plus/Plus Query 8344 TCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCG 8403 ||||||| ||| |||||||||||| |||||| ||||| | |||||| |||||||| Sbjct 456 TCTCACTTTGTCACCCAGGCTGGAGCACAGTGGTGCCATCTCGGTTCACTGTAACCTCCG 515 Query 8404 CCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAA 8463 |||||||||||||||| || ||| ||||||||||| |||||||||||| |||||||| Sbjct 516 CCTCCCGGGTTCAAGCCATCTTCCCACCTCAGCCTCCGGAGTAGCTGGGACTACAGGCAT 575 Query 8464 AAGCCACCACGCCAAGCTAA--TTTTTGTATTTTTAGTAGAGA-----GAGGGTTTCACC 8516 ||||| || || ||||| |||||| ||||||||| |||| ||| |||||| Sbjct 576 GTGCCACTACACCCGGCTAATTTTTTTGCATTTTTAGTGGAGACGGGGCGGGGGTTCACC 635 Query 8517 ATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCC 8576 |||||| |||||||||||||||||||| ||||||| |||| ||||| |||| | |||||| Sbjct 636 ATGTTGACCAGGCTGGTCTCGAACTCCCGACCTCAAGTGACCCACCCGCCTTGACCTCCC 695 Query 8577 AAAGTGCTGGGATTACAGGCATGAGCCACCGCGCC 8611 ||| ||||||||||||||||||||||||||| ||| Sbjct 696 AAAATGCTGGGATTACAGGCATGAGCCACCGTGCC 730 >seq358428 Length=2167 Score = 152 bits (168), Expect = 5e-32 Identities = 106/119 (89%), Gaps = 1/119 (1%) Strand=Plus/Plus Query 8344 TCTCACTCT-GTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCC 8402 ||| ||||| |||||||||||||||||||| ||| ||||||| |||||||||||||||| Sbjct 2048 TCTTACTCTTGTTGCCCAGGCTGGAGTGCAATGGTATGATCTCGGCTCACTGCAACCTCC 2107 Query 8403 GCCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGC 8461 ||||| | |||||||| |||||||||||||||||||| ||||| ||||||||||||| Sbjct 2108 GCCTCGCAGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCAAGTAGTTGGGATTACAGGC 2166 Score = 145 bits (160), Expect = 8e-30 Identities = 98/110 (89%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 8507 GGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCC 8566 |||||||||||| ||| ||||||||| || ||||||||||||||| ||||||| ||||| Sbjct 1867 GGGTTTCACCATTTTGCCCAGGCTGGACTTGAACTCCTGACCTCAAGTGATCCTCCTGCA 1926 Query 8567 TCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCGCCTGGCC 8616 || ||||||||||||| |||||||| |||| |||||||||| |||||||| Sbjct 1927 TCAGCCTCCCAAAGTGTTGGGATTATAGGCCTGAGCCACCGTGCCTGGCC 1976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 519079429448800