Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq118272 147 2e-30 seq368444 84.2 2e-11 >seq118272 Length=246527 Score = 147 bits (162), Expect = 2e-30 Identities = 174/233 (75%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || ||||||||||| ||| ||| || ||||| |||||||| Sbjct 50326 CATGCCACCGCGCAGACGCAGGACCAGGTGAAGGGTGGACTCTTTCTGGATATTGTAATC 50267 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || || | || || |||||||| ||||||||||||| |||||||||||| | Sbjct 50266 CGACAGGGTTCGGCCATCTTCGAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCGGG 50207 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 ||| | |||||||| ||| || || |||| | |||| | || |||||| || | Sbjct 50206 AGGAATGCCTTCCTTGTCCTGAATTTTGGCCTTC-ACGTTCTCGATTGTGTCGCTGGGCT 50148 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||||||| || || ||||| || |||||||| || |||||||| |||||| Sbjct 50147 CCACCTCCAGTGTGATTGTCTTACCGGTGAGGGTTTTGACGAAGATCTGCATG 50095 Score = 147 bits (162), Expect = 2e-30 Identities = 160/210 (76%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || ||| ||||||||||||||||||||||| || || | || ||| Sbjct 51444 ACAAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAATCGGACAGGGTTCGGCCATCTTCC 51385 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | |||||| || |||||||| | ||||||||| || | || | |||||||| ||| Sbjct 51384 AACTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCCGGGGGAATGCCTTCCTTGTCCTGG 51325 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||| | |||| | ||||||||| || || ||||||| || || ||||| Sbjct 51324 ATCTTAGCCTTGAC-GTTCTCGATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGTCTT 51266 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| ||||||||||||||||||||||| Sbjct 51265 CCCCGTCAGGGTCTTCACGAAGATTTGCAT 51236 Score = 143 bits (158), Expect = 2e-29 Identities = 175/236 (74%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | ||||| || |||||| || || || ||| || ||||||||||| Sbjct 50785 TTGCATGCCACCACGCAGTCGCAGCACCAGATGGAGGGTAGACTCTTTCTGGATGTTGTA 50726 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || | || ||| | || || |||||||| || |||||||||| |||||||||||| Sbjct 50725 GTCCGACAGGGTGCGACCATCTTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATC 50666 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGG 44282 | ||| | ||||||||| ||| || ||| |||| | |||| | || ||||| || Sbjct 50665 GGGAGGAATACCTTCCTTGTCCTGAATTTTCGCCTTC-ACGTTCTCGATCGTGTCACTGG 50607 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 |||||||||| || || ||||| || || || ||||| |||||||| |||||| Sbjct 50606 GCTCCACCTCCAGTGTGATAGTCTTGCCGGTCAGAGTCTTAACGAAGATCTGCATG 50551 Score = 134 bits (148), Expect = 1e-26 Identities = 169/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || ||||||||||| ||| ||| || ||||||||||| || Sbjct 50098 CATGCCACCGCGCAGACGCAGGACCAGGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTC 50039 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || ||| || |||| || || ||||| ||||| ||||||| |||||||||||| | Sbjct 50038 GGAGAGGGTACGGCCGTCCTCGAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCCGG 49979 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | || ||||| ||| || || ||||| || | || |||||| | || Sbjct 49978 GGGGATTCCCTCCTTGTCCTGGATTTTGGCCTTCACGTTTTCGATCGTGTCGCTCGGCTC 49919 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||| | ||| |||||||| || ||||||||||| || || || |||||| Sbjct 49918 AACCTCGAGCGTGATCGTCTTGCCAGTGAGGGTCTTGACAAAAATCTGCATG 49867 Score = 113 bits (124), Expect = 3e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||| || ||| |||||| ||||||||||| || | || ||| | || || Sbjct 50532 ACCAAGTGTAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCTTCG 50473 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| ||||| |||||||||||||||||||| | || | |||||||| ||| Sbjct 50472 AGTTGCTTGCCGGCGAAGATCAAACGCTGCTGATCCGGGGGGATCCCTTCCTTGTCCTGG 50413 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 || || || | || | || ||||| || || || |||| ||| || || || Sbjct 50412 ATTTTGGCTTTGACATTTTCAATTGTGTCACTGGGCTCGACTTCCAGCGTGATGGTTTTG 50353 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || |||||||| || |||||||| |||||| Sbjct 50352 CCGGTGAGGGTTTTGACGAAGATCTGCATG 50323 Score = 113 bits (124), Expect = 3e-20 Identities = 166/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| || | || | || |||||||| || ||| || || ||||||||||| Sbjct 51241 TTGCATTCCACCGCGGAGCCGCAGAACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTA 51182 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || | || || |||| || |||||||| ||||||||||| | |||||| || || Sbjct 51181 GTCCGACAGGGTACGACCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGTTGGTC 51122 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 | ||| | |||||||| ||| ||||| |||| || | |||||||| || Sbjct 51121 CGGAGGAATCCCTTCCTTGTCCTGGATCTTGGCTTTCACGTTTTCGATGGTGTCACTGGG 51062 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || ||||| | ||||| ||||| || || || || || || || ||||||||| Sbjct 51061 CTCGACCTCGAGAGTAATGGTCTTGCCGGTCAGAGTTTTTACAAAAATTTGCATG 51007 Score = 95.1 bits (104), Expect = 9e-15 Identities = 162/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | |||| || ||| || ||||| ||| ||| || ||||||||||| Sbjct 51013 TTGCATGCCACCACGAAGTCGCAGCACAAGATGAAGGGTGGACTCTTTCTGGATGTTGTA 50954 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || | || ||| |||| || || || || ||||| ||||| | ||||||||| || Sbjct 50953 GTCTGACAGCGTGCGGCCGTCCTCGAGTTGTTTGCCGGCGAAGATGAGACGCTGCTGGTC 50894 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 | || | || ||||| || ||||| ||| | || | ||||| || || Sbjct 50893 AGGTGGAATGCCCTCCTTGTCTTGGATCTTTGCCTTGACGTTTTCGATGGTATCACTGGG 50834 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || || | || || ||||| || || || ||||| || |||||||||||| Sbjct 50833 CTCAACTTCGAGGGTGATGGTCTTGCCGGTCAGAGTCTTTACAAAGATTTGCATG 50779 >seq368444 Length=413118 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTC 44184 || ||||||||| || || |||||| ||||||||||| || | || |||| | || Sbjct 77713 CAGCACCAGGTGTAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGCCCATC 77772 Query 44185 GTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||||||||||| || |||||||||| ||||||||| || Sbjct 77773 CTCCAGCTGCTTGCCCGCAAAGATCAGACGCTGCTGGTC 77811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358369297080564