Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value seq186087 109 7e-19 seq111545 109 7e-19 seq16628 95.1 2e-14 >seq186087 Length=211424 Score = 109 bits (120), Expect = 7e-19 Identities = 132/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 155877 ATTTGAAGACGCCCCTTTTCATCGGGTAATCCAATTTCTATCTTCAATTCCAACCGCCCA 155936 || || || || |||||||| ||||| |||||||| || |||| | ||||| ||||| Sbjct 81196 ATCTGCAGTCGGCCCTTTTCGTCGGGCAATCCAATCTCCATCTGGACCTCCAAACGCCCT 81137 Query 155937 GGTCTTAATAATGCTTCGTCAATTAAGTCGGGTCTGTTGGTCATACCTATGATTAAAATG 155996 |||| | || |||||||| || | ||| | | ||||||||||| || | | ||| Sbjct 81136 GGTCGTGTTAGCGCTTCGTCGATCATGTCACGCCGATTGGTCATACCGATCACCAGGATG 81077 Query 155997 TTGTTTAAAGATTCTACACCGTCTATTTTAGACAATAATTGATTGACTACGGCGTCGTGC 156056 ||||| || ||||| || || || |||||||| || | ||| || || || | |||||| Sbjct 81076 TTGTTCAACGATTCGACGCCATCAATTTTAGATAACAGTTGGTTTACCACAGTATCGTGC 81017 >seq111545 Length=1335 Score = 109 bits (120), Expect = 7e-19 Identities = 132/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 155877 ATTTGAAGACGCCCCTTTTCATCGGGTAATCCAATTTCTATCTTCAATTCCAACCGCCCA 155936 || || || || |||||||| ||||| |||||||| || |||| | ||||| ||||| Sbjct 978 ATCTGCAGTCGGCCCTTTTCGTCGGGCAATCCAATCTCCATCTGGACCTCCAAACGCCCT 919 Query 155937 GGTCTTAATAATGCTTCGTCAATTAAGTCGGGTCTGTTGGTCATACCTATGATTAAAATG 155996 |||| | || |||||||| || | ||| | | ||||||||||| || | | ||| Sbjct 918 GGTCGTGTTAGCGCTTCGTCGATCATGTCACGCCGATTGGTCATACCGATCACCAGGATG 859 Query 155997 TTGTTTAAAGATTCTACACCGTCTATTTTAGACAATAATTGATTGACTACGGCGTCGTGC 156056 ||||| || ||||| || || || |||||||| || | ||| || || || | |||||| Sbjct 858 TTGTTCAACGATTCGACGCCATCAATTTTAGATAACAGTTGGTTTACCACAGTATCGTGC 799 >seq16628 Length=231947 Score = 95.1 bits (104), Expect = 2e-14 Identities = 391/604 (65%), Gaps = 22/604 (4%) Strand=Plus/Minus Query 50304 CCTCTATTTACGACTaaaaaaaTGTTTTGGCGCGGAATAGCGGAAGAACTTTTATGGTTC 50363 ||| |||| || || ||| | |||||||| ||| | | |||||||||| | ||||| Sbjct 231157 CCTTTATTAACAACCAAACGCGTTTTTTGGCGAGGAGTTGTGGAAGAACTTCTCTGGTTT 231098 Query 50364 CTCGACGGATCTACAAATTCTTTAAAGTTATCGGAGAAGTCCG-TTCGTATATGGGACGC 50422 ||| ||||||||| || | | | || || || | || ||| ||||||||| Sbjct 231097 CTCCGCGGATCTACCGATGCCAAAGAATTGTCAGA-ACGTGGTATTCACATATGGGACCA 231039 Query 50423 TCACGGTTCCAGATCAAATT-TAGATCGTTTAGGATTTAATTACAGAAACAAAGGAGATT 50481 ||||||| | || | || | ||| | ||||| ||| | | || | |||| ||| Sbjct 231038 AAACGGTTCTCG-TCGATTTCTCGATAGCTTAGGTTTTTTTGATCGAGAAGAAGGGGATC 230980 Query 50482 TAGGACCTGTTTACGGTTTTCAATGGAGACATTTTGGAGCGCGTTACATAAATTGCGACG 50541 | ||||| || ||||| ||||||||| | ||||||||||| || | ||| | || Sbjct 230979 TTGGACCGGTCTACGGATTTCAATGGCGTCATTTTGGAGCCACCTATAGAAACTCGCACA 230920 Query 50542 TAAATTACGAAGGTCAAGGCGTGGATCAACTGCAAAAAATTATAACGACGTTGAAAACAA 50601 | | || | | |||| || |||||| | || | | | | | |||| Sbjct 230919 CAGACTATGGAAACGAAGGTGTTGATCAAATTACAAGACTCGTTGAAATCATCAAAAATG 230860 Query 50602 ACCCCGACGATCGGCGTAT--TTTAATGACCGCCTGGAATCCAACCGATATAGATCAAAC 50659 | ||| |||| || || || | | ||| || ||||||||||| ||||| | ||| Sbjct 230859 ATCCCAACGACCGCCGAATGATATTATGTTCG--TGGAATCCAACAGATATTAAGAAAAT 230802 Query 50660 CGTTTTACCTCCGTGTCATGTTTTATGTCAATTTTATGCCACAGACAATGTT---TTATC 50716 || |||| || ||||| ||| || || || | |||| ||| | | || Sbjct 230801 GGTCCTACCACCATGTCACTGTTTGGCACAGTTCTA---CGTAGACGATGATGAGCTCTC 230745 Query 50717 CTGTCAATGTTATCAAAGATCAGCTGATATGGGTTTAGGCGTTCCTTTCAACGTAGCTTC 50776 ||||||| ||||| | || || |||||||| || || || || || ||| | || Sbjct 230744 GTGTCAATTGTATCAGCGTTCTGCCGATATGGGATTGGGTGTACCGTTTAACATTGCGAG 230685 Query 50777 TTACGCTTTATTAACGTATTTGATCGCTCAAGCCGTCGATATGAA----ACCGGGAGAAT 50832 ||||||| | | || | |||| || ||| || || ||| ||| || |||| Sbjct 230684 TTACGCTCTTCTCACACACATGATGGC-AAAG--GT-GACTGGAAAACGACCTGGTGAAT 230629 Query 50833 TTATTCATACGTTAGGAGACGCTCATATTTACCTCGATCACGTCGATGCTTTAAAGGAGC 50892 || |||| | ||||| || || || |||||||| | ||||| || | | ||| | | Sbjct 230628 TTGTTCACAATTTAGGCGATGCCCACATTTACCTTAACCACGTGGAGTCCGTCAAGCAAC 230569 Query 50893 AATT 50896 |||| Sbjct 230568 AATT 230565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 663994213127520