Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq118272 163 7e-35 >seq118272 Length=246527 Score = 163 bits (180), Expect = 7e-35 Identities = 162/208 (78%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 ||||| |||||||| || || || || || || |||||||| ||||| || || ||| Sbjct 51239 CAAATCTTCGTGAAGACCCTGACGGGGAAGACCATCACCCTGGAGGTCGA--GCCCAGCG 51296 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| |||||||| ||||| || || |||||||||| Sbjct 51297 ACACCATCGAGAACGTCAAGGCTAAGATCCAGGACAAGGAAGGCATTCCCCCGGACCAGC 51356 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || ||||| || ||||| ||| | |||||||| | || || ||||||| ||| Sbjct 51357 AGCGTCTCATCTTTGCTGGAAAGCAGTTGGAAGATGGCCGAACCCTGTCCGATTACAACA 51416 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 ||||||| || || || || || ||||| Sbjct 51417 TCCAAAAGGAGTCCACCCTCCACCTTGT 51444 Score = 149 bits (164), Expect = 1e-30 Identities = 165/218 (76%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 |||||||| || |||||||| || || || || || || |||||||| || || ||| Sbjct 51011 CAAATTTTTGTAAAAACTCTGACCGGCAAGACCATTACTCTCGAGGTCGA--GCCCAGTG 51068 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||||| ||||| ||| ||||| |||||||| ||||| || ||||||||||| | Sbjct 51069 ACACCATCGAAAACGTGAAAGCCAAGATCCAGGACAAGGAAGGGATTCCTCCGGACCAAC 51128 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || ||||| ||||| || ||||| || || || | || || | || || ||| Sbjct 51129 AGCGTCTCATCTTTGCCGGCAAGCAGCTTGAGGACGGTCGTACCCTGTCGGACTACAACA 51188 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 |||| |||||||| || || || || ||| || | ||| Sbjct 51189 TCCAGAAAGAATCCACCCTCCACCTGGTTCTGCGGCTC 51226 Score = 145 bits (160), Expect = 2e-29 Identities = 158/208 (76%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||| ||||| ||||| || || || ||||| || |||||||| || ||| Sbjct 50099 CAGATCTTCGTCAAAACCCTCACCGGTAAGACAATCACACTGGAGGTGGA--GCCCAGCG 50156 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| ||||||||||| || || ||||||||||| ||||| || ||||| || |||| Sbjct 50157 ACACAATCGAGAACGTGAAGGCCAAAATTCAGGACAAGGAAGGCATTCCTCCCGATCAGC 50216 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || ||||| ||||| || |||||||||||||| | || || | ||||| || Sbjct 50217 AGCGTCTGATCTTTGCCGGCAAGCAGCTCGAAGATGGCCGAACCCTGTCGGATTACAATA 50276 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| ||||| || || || || || || Sbjct 50277 TCCAGAAAGAGTCCACCCTTCACCTGGT 50304 Score = 143 bits (158), Expect = 6e-29 Identities = 163/217 (75%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||| || ||||| || || || || ||||| || |||||||| || ||| Sbjct 50555 CAGATCTTCGTTAAGACTCTGACCGGCAAGACTATCACACTGGAGGTGGA--GCCCAGTG 50612 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| ||||||||||| || || ||||||||||| ||||| || ||||| || |||| Sbjct 50613 ACACGATCGAGAACGTGAAGGCGAAAATTCAGGACAAGGAAGGTATTCCTCCCGATCAGC 50672 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || ||||| || || || |||||||||||||| | || || | || || ||| Sbjct 50673 AGCGTCTGATCTTTGCTGGCAAGCAGCTCGAAGATGGTCGCACCCTGTCGGACTACAACA 50732 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 |||| ||||| || || || ||||| || || |||| Sbjct 50733 TCCAGAAAGAGTCTACCCTCCATCTGGTGCTGCGACT 50769 Score = 143 bits (158), Expect = 6e-29 Identities = 163/217 (75%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 ||||| || || || ||||| || || || || ||||||||||| || | ||| || | Sbjct 50783 CAAATCTTTGTAAAGACTCTGACCGGCAAGACCATCACCCTCGAAGTTG--AGCCCAGTG 50840 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | |||||||| |||||||| |||||| || ||||| || || || || || ||||||| Sbjct 50841 ATACCATCGAAAACGTCAAGGCAAAGATCCAAGACAAGGAGGGCATTCCACCTGACCAGC 50900 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || ||||||||||| ||||| ||||| || || | || || | || || ||| Sbjct 50901 AGCGTCTCATCTTCGCCGGCAAACAACTCGAGGACGGCCGCACGCTGTCAGACTACAACA 50960 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 |||| ||||| || || || |||||||| || |||| Sbjct 50961 TCCAGAAAGAGTCCACCCTTCATCTTGTGCTGCGACT 50997 Score = 134 bits (148), Expect = 3e-26 Identities = 158/209 (76%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || ||||| ||||| || || || ||||| ||||| |||||||||| ||| | | Sbjct 49643 CAGATCTTCGTCAAAACCCTGACCGGGAAAACCATCACGCTCGAGGTGG--AGCCGAGCG 49700 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| || || ||||| || |||||||| ||||| || || ||||| || ||||||| Sbjct 49701 ACACGATTGAAAACGTGAAGGCTAAGATTCAAGACAAGGAGGGGATCCCGCCCGACCAGC 49760 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAAC 178100 |||| || ||||||||||| || ||||| ||||| ||| | || |||| |||| || ||| Sbjct 49761 AACGTCTGATCTTCGCCGGCAAGCAGCTTGAAGACGGACGCAC-CTTGTCCGACTACAAC 49819 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129 | || || || || || || || || || Sbjct 49820 ATTCAGAAGGAGTCCACCCTCCACCTGGT 49848 Score = 131 bits (144), Expect = 4e-25 Identities = 155/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || ||||| || || || ||||| || || |||||||| |||||||| || || || Sbjct 49871 CAGATTTTTGTCAAGACCCTCACTGGCAAGACGATCACGCTCGAGGTTGA--GCCGAGCG 49928 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| ||||| ||||| || || || |||||||| || |||||||| ||||| |||| Sbjct 49929 ACACGATCGAAAACGTGAAGGCCAAAATCCAGGACAAGGAGGGAATCCCCCCGGATCAGC 49988 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || ||||||||||| || || ||||| || || | || || |||| || ||| Sbjct 49989 AGCGTCTGATCTTCGCCGGCAAGCAACTCGAGGACGGCCGTACCCTCTCCGACTACAACA 50048 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| ||||| || || || || || || Sbjct 50049 TCCAGAAAGAGTCCACCCTTCACCTGGT 50076 Score = 127 bits (140), Expect = 5e-24 Identities = 156/210 (74%), Gaps = 5/210 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||| ||||| ||||| || ||||| ||||| || || || || || ||| Sbjct 50327 CAGATCTTCGTCAAAACCCTCACCGGCAAAACCATCACGCTGGAAGTCGA--GCCCAGTG 50384 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| || || || |||||| || || |||||||| ||||| ||||| ||||| |||| Sbjct 50385 ACACAATTGAAAATGTCAAAGCCAAAATCCAGGACAAGGAAGGGATCCCCCCGGATCAGC 50444 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || | ||||||||||| || || ||||||||||| | || || | || || ||| Sbjct 50445 AGCGTTTGATCTTCGCCGGCAAGCAACTCGAAGATGGCCGCACCCTGTCGGACTACAACA 50504 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTT 178131 |||| || || || || || || |||| || Sbjct 50505 TCCAGAAGGAGTCCACCCTACA-CTTGGTT 50533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1198032596565448