Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq118272 174 1e-38 seq368444 96.9 3e-15 >seq118272 Length=246527 Score = 174 bits (192), Expect = 1e-38 Identities = 178/230 (77%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| ||||| | ||||| || || ||| ||| ||||| ||||| |||||||| Sbjct 50095 GCCACCGCGCAGACGCAGGACCAGGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCGGA 50036 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||| || |||| ||||| |||||||||||||| ||||| ||||| || |||| ||| Sbjct 50035 GAGGGTACGGCCGTCCTCGAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCCGGGGG 49976 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | | |||||||||| |||||| |||| ||| | | |||||||||| ||| | Sbjct 49975 GATTCCCTCCTTGTCCTGGATTTTGGCCTTC-ACGTTTTCGATCGTGTCGCTCGGCTCAA 49917 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| | ||| ||||| || || || || ||||| || |||||||||||| Sbjct 49916 CCTCGAGCGTGATCGTCTTGCCAGTGAGGGTCTTGACAAAAATCTGCATG 49867 Score = 163 bits (180), Expect = 3e-35 Identities = 178/231 (77%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| || || | ||||| || || ||| ||||||||||||||| |||||||| Sbjct 49867 GCCTCCGCGCAGCCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGA 49808 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGG 41753 | |||||| |||| || ||||||||||||||||| ||||| || || ||||| |||| Sbjct 49807 CAAGGTGCGTCCGTCTTCAAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGGGCGG 49748 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCC 41812 || | | |||||||| | ||| | || || | ||| | | |||||||||| |||| Sbjct 49747 GATC-CCCTCCTTGT-CTTGAATCTTAGCCTTCACGTTTTCAATCGTGTCGCTCGGCTCC 49690 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||| | ||| || ||||| || ||||| || || ||||| ||||||||| Sbjct 49689 ACCTCGAGCGTGATGGTTTTCCCGGTCAGGGTTTTGACGAAGATCTGCATG 49639 Score = 141 bits (156), Expect = 9e-29 Identities = 171/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| ||||| | ||||| || || ||| ||| ||||| || || || || || Sbjct 50323 GCCACCGCGCAGACGCAGGACCAGGTGAAGGGTGGACTCTTTCTGGATATTGTAATCCGA 50264 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||| || | || ||||||||||||||||| || ||||| ||||| || || | || Sbjct 50263 CAGGGTTCGGCCATCTTCGAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCGGGAGG 50204 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTCCA 41813 || || ||||||||| ||| |||| | ||||| | | |||||||| | ||||| Sbjct 50203 AATGCCTTCCTTGTCC-TGAATTTTGGCCTTCACGTTCTCGATTGTGTCGCTGGGCTCCA 50145 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||||| || || || ||||| || || || || ||||| ||||||||| Sbjct 50144 CCTCCAGTGTGATTGTCTTACCGGTGAGGGTTTTGACGAAGATCTGCATG 50095 Score = 141 bits (156), Expect = 9e-29 Identities = 171/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | ||||||||| || || ||| ||||| ||||| ||||| || Sbjct 50779 GCCACCACGCAGTCGCAGCACCAGATGGAGGGTAGACTCTTTCTGGATGTTGTAGTCCGA 50720 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||| | || |||||||||||||| || || ||||| ||||| || || | || Sbjct 50719 CAGGGTGCGACCATCTTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCGGGAGG 50660 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTCCA 41813 || | ||||||||| ||| |||| | ||||| | | ||||| || | ||||| Sbjct 50659 AATACCTTCCTTGTCC-TGAATTTTCGCCTTCACGTTCTCGATCGTGTCACTGGGCTCCA 50601 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||||| || || || || || ||||| ||||| ||||| ||||||||| Sbjct 50600 CCTCCAGTGTGATAGTCTTGCCGGTCAGAGTCTTAACGAAGATCTGCATG 50551 Score = 132 bits (146), Expect = 4e-26 Identities = 169/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| || || | |||| || || ||| ||||||||| ||||| ||||| || Sbjct 50551 GCCACCGCGGAGCCGGAGAACCAAGTGTAGGGTGGACTCCTTCTGGATGTTGTAGTCCGA 50492 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||| | || ||||| |||||||||||||| |||| ||||| || |||| ||| Sbjct 50491 CAGGGTGCGGCCATCTTCGAGTTGCTTGCCGGCGAAGATCAAACGCTGCTGATCCGGGGG 50432 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | | ||||||||| || |||| |||| || | | ||||| || | ||| | Sbjct 50431 GATCCCTTCCTTGTCC-TGGATTTTGGCTTTGACATTTTCAATTGTGTCACTGGGCTCGA 50373 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | |||| ||| || ||||| || || || || || ||||| ||||||||| Sbjct 50372 CTTCCAGCGTGATGGTTTTGCCGGTGAGGGTTTTGACGAAGATCTGCATG 50323 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || || | ||||| || || ||| || ||||| ||||| ||||| || Sbjct 51234 CCACCGCGGAGCCGCAGAACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCCGAC 51175 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || |||| || |||||||||||||| || || || ||||||||||||| ||| Sbjct 51174 AGGGTACGACCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCCGGAGGA 51115 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||||||| || | || |||| ||| | | ||||| || | ||| || Sbjct 51114 ATCCCTTCCTTGTCC-TGGATCTTGGCTTTCACGTTTTCGATGGTGTCACTGGGCTCGAC 51056 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||| | || || || || || ||||| || ||||| ||||| |||||| Sbjct 51055 CTCGAGAGTAATGGTCTTGCCGGTCAGAGTTTTTACAAAAATTTGCATG 51007 Score = 120 bits (132), Expect = 3e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | ||| ||||| || ||| ||| ||||| ||||| ||||| || Sbjct 51007 GCCACCACGAAGTCGCAGCACAAGATGAAGGGTGGACTCTTTCTGGATGTTGTAGTCTGA 50948 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| |||| ||||| || ||||||||||| || || ||||| ||||| | || Sbjct 50947 CAGCGTGCGGCCGTCCTCGAGTTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGTGG 50888 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || || |||||||| | || | ||||| | ||| | | || || || | ||| | Sbjct 50887 AATGCCCTCCTTGT-CTTGGATCTTTGCCTTGACGTTTTCGATGGTATCACTGGGCTCAA 50829 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | || | || || || || || ||||| |||||||| || || |||||| Sbjct 50828 CTTCGAGGGTGATGGTCTTGCCGGTCAGAGTCTTTACAAAGATTTGCATG 50779 >seq368444 Length=413118 Score = 96.9 bits (106), Expect = 3e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 ||||||| || | || | |||||| || || || ||||||||| ||||| ||||| | Sbjct 77697 CGCCGCCACGCAAGCGCAGCACCAGGTGTAGGGTCGACTCCTTCTGGATGTTGTAGTCCG 77756 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 | ||||||||| | || || ||||||||||| || || ||||| ||||| ||||| | || Sbjct 77757 ACAGGGTGCGCCCATCCTCCAGCTGCTTGCCCGCAAAGATCAGACGCTGCTGGTCAGGGG 77816 Query 41754 G 41754 | Sbjct 77817 G 77817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 460168779630400