Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ladona_20fulva_20[genbank_20GCA_5F000376725.1_202013-04-23] 10,166 sequences; 1,158,111,285 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq615 131 2e-25 seq2348 111 2e-19 seq7298 86.0 7e-12 >seq615 Length=2534639 Score = 131 bits (144), Expect = 2e-25 Identities = 157/211 (74%), Gaps = 3/211 (1%) Strand=Plus/Plus Query 24170 AATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATAT 24229 ||| | ||||||||||||||| | || ||||| || || | |||||| ||||||||||| Sbjct 1866965 AATAAGTTCGTTGGAAAACGTCAAACCAGGCATAAGTCCTCTCTTTTTCAGCCAAAATAT 1867024 Query 24230 GGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTC 24289 || ||||||||||| ||||||||||||||||||||||| ||||| |||| | | ||| Sbjct 1867025 TGAAGCAAATGATCCCGAAAAGAAAATTCCTTCTACTGCTGCAAATGCAACCACACGTTC 1867084 Query 24290 TCCATAACCGGCGCTGTCA--TG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTAC 24346 || ||| || | ||| || ||||||| ||||| ||||||||| || Sbjct 1867085 ACCGAAACTTGCAGTATCACTTGCAATCCACTGCAATGCCCACGTAGCCTTCTTTCGAAC 1867144 Query 24347 ACAAGGCATTGTCTCTATAGCATTAAAGAGA 24377 ||| || | || || || ||||| || ||| Sbjct 1867145 ACACGGTAAGGTTTCAATGGCATTGAATAGA 1867175 Score = 114 bits (126), Expect = 2e-20 Identities = 129/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 24396 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 24455 ||||| | || || || || | |||| |||||||||||||||| ||||| ||||| Sbjct 1867268 TCTTTGATGTAAGTGTCTATGAGAAGAGAGTACATTTCCGAATGAACATTTTCCATGGCT 1867327 Query 24456 ATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCT 24515 |||||||||||||| ||||| || || || | ||| || |||||| || |||||||| Sbjct 1867328 ATTTGAAATCCGTAAAAACACCTTGCTTCTGGAATTTGAACTTCTTGACTGAATCGTTCC 1867387 Query 24516 GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATG 24568 | | |||||| || || ||||| || || || ||||| || ||||| || Sbjct 1867388 ACCAGATTTTCGTTGACGATTCCATCCGATGCCGCGAAAAAAGCTAATACGTG 1867440 Score = 95.1 bits (104), Expect = 1e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 24621 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 24680 || || | ||| ||||||||||||||||||||||||||||| || || || ||||| ||| Sbjct 1867573 TTGGAAAGATCAACTTCTTCCACTGTCCAAAATGATGCCTCCGCTTTCTTGTACATCTTC 1867632 Query 24681 CAGATGTCATGATATTGAATTGGAAAAATAACAAA 24715 || || ||||| || ||||| || || || ||||| Sbjct 1867633 CAAATATCATGGTACTGAATCGGGAATATCACAAA 1867667 >seq2348 Length=1756034 Score = 111 bits (122), Expect = 2e-19 Identities = 161/225 (72%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 53938 TGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGG 53997 ||| |||||| ||| || || || |||||| || | |||||| |||| ||||| || Sbjct 612049 TGTGTACAATTTTTCGAATTCTTCACCCCAACAATCGAACAATCCTGGACTTTCATGGGG 611990 Query 53998 ACACATCAACGACCACTCTCCGTCATCCTTCA-CTCGTTTCATAAAGAGATCAGGAATCC 54056 ||||||||| ||| | || | | | |||| | |||||||| || | |||||||||| Sbjct 611989 ACACATCAAACTCCATACGCCATTA-CTTTCAACACGTTTCATGAACAAGTCAGGAATCC 611931 Query 54057 AAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGAT 54116 | || || || ||||| | || ||| |||||| |||||||||||||| || || | Sbjct 611930 ACAGGGCGTAGAAGAGATCACGGGCTCTCACTTCCTCTTTTCCTGTATTCTTCTTCAGGT 611871 Query 54117 CGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 54161 | | || | | ||| |||| |||||| || || | || |||| Sbjct 611870 CCAAAAATTCAAAAATGTCAGCATGCCATGGCTCAAGATAAATGG 611826 Score = 105 bits (116), Expect = 8e-18 Identities = 156/218 (72%), Gaps = 5/218 (2%) Strand=Plus/Minus Query 54179 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 54238 |||||||| || ||||| | |||||| || || || ||||| || | || ||| || | | Sbjct 611583 TTGTTTCCACCTTGATCCACGTATCTTGCCGTATTGTTATATACCCGCAGCATAGGTACA 611524 Query 54239 ATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTAC 54296 || |||||||| |||||||||| || ||||||||||| ||| | | | || | | | Sbjct 611523 ATTCCATTGGAAACACCATTGGTGCCAGAGATATAGCTACCAGTAGATCTGATGCAATGC 611464 Query 54297 TAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTAT 54356 ||| |||||||| || || || || || | | || ||| |||| ||||| | Sbjct 611463 ACATT--CAGACCTATTCCACCAGCTGACTTGGAAACCATCGCACATTGTTTCAACGTGT 611406 Query 54357 CATAGATGCCCTCTATACTATCATCCATCAT-GTTAAG 54393 |||| || || || || || || ||| |||| |||||| Sbjct 611405 CATATATACCATCAATGCTGTCTTCCTTCATCGTTAAG 611368 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 53750 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 53809 |||| | ||||||||| || |||||||| || ||||||||||| | ||||| |||||| Sbjct 614263 TATTCAACTATCTCAGTACACAGATTACTGCATTTGATGGTTCCAAGGTTTTGCTGATTA 614204 Query 53810 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGAT 53869 ||| | || || ||||| || || || || ||||| || |||||||| ||||| ||| Sbjct 614203 GATTTTCTATTGCAAGCATCTTTGTATAGCATAAATGGAGTTCCAGTTTCTATCTGAGAT 614144 Query 53870 TCTAT 53874 || || Sbjct 614143 TCAAT 614139 >seq7298 Length=1178 Score = 86.0 bits (94), Expect = 7e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 52910 TAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTG 52969 ||| | || || || ||||| ||||||| ||| || ||||| || ||||| ||||| ||| Sbjct 1019 TAATTTGGCTCAGCAATATGTATATTCAAAGACTGGCTTTGGTCAATGAATGCTCCTCTG 960 Query 52970 TCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGT 53016 ||| ||||||||| || || | || || ||||||||||| | ||| Sbjct 959 TCTACAGCCATTTCAATTATGTTTTTCTGAGGAATTTCCCATACAGT 913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593646152827680