Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ladona_20fulva_20[genbank_20GCA_5F000376725.1_202013-04-23] 10,166 sequences; 1,158,111,285 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq615 109 6e-19 seq3560 87.8 2e-12 seq1460 82.4 8e-11 >seq615 Length=2534639 Score = 109 bits (120), Expect = 6e-19 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 116723 TTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGAC 116782 ||||| || | ||||| |||||| | ||||| | || |||||||| || || Sbjct 1867470 TTGAAAGAAGAAGAGCGACATTTCTTATCTCACGTATTAGCTTTTTTCGCGGCATCGGAT 1867411 Query 116783 GGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCG 116842 || ||||||||||| |||||||| || || ||| ||| || || || | | || || Sbjct 1867410 GGAATCGTCAACGAAAATCTGGTGGAACGATTCAGTCAAGAAGTTCAAATTCCAGAAGCA 1867351 Query 116843 CGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACC 116902 |||| || ||||| ||||| || |||||||| || || || ||||||||||| || Sbjct 1867350 AGGTGTTTTTACGGATTTCAAATAGCCATGGAAAATGTTCATTCGGAAATGTACTCTCTT 1867291 Query 116903 CTCATCGACACGTAC 116917 ||||| ||||| ||| Sbjct 1867290 CTCATAGACACTTAC 1867276 >seq3560 Length=1522174 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| ||||| || ||||| ||||| || ||| | || || ||| | | Sbjct 965989 AATGCAGATCTTCGTCAAAACTCTTACGGGAAAAACTATTACCCTTGAAGTGGAACCATC 966048 Query 40749 CGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | ||||| | |||| ||| || | ||||| || ||||| || | |||| Sbjct 966049 AGACACTATTGAAAACGTT-AAGGCAAAGATCCAGGACAAGGAAGGCATTCCACCTGACC 966107 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || | |||| || || ||||||||||| || | | || || || || | Sbjct 966108 AGCAGAGATTGATCTTTGCTGGTAAACAGCTGGAGGATGGCAGAACTCTTTCTGATTATA 966167 Query 40868 ACATCCAGAAGG 40879 ||||||| |||| Sbjct 966168 ACATCCAAAAGG 966179 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || ||||| || || || || || | || || ||| | | Sbjct 967773 ATGCAAATCTTTGTCAAGACACTCACTGGAAAGACAATTACTCTGGAAGTGGAACCTTCA 967832 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| |||||| | ||||| || ||||| || | |||||| Sbjct 967833 GACACCATTGAGAATGTTAAGGCAAAAATCCAGGACAAGGAAGGCATTCCACCTGACCAG 967892 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | |||| || || ||||||||||| || | || || ||| || |||||| Sbjct 967893 CAGAGATTGATCTTTGCTGGTAAACAGCTGGAGGATGGCCGAACACTCTCAGATTACAAC 967952 Query 40870 ATCCAGAA 40877 |||||||| Sbjct 967953 ATCCAGAA 967960 Score = 86.0 bits (94), Expect = 6e-12 Identities = 134/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||||||||| || || || || || || |||||||| | || || || |||| | Sbjct 967207 ATGCAAATATTCGTTAAGACACTGACTGGAAAGACCATCACACTGGAAGTGGA-GCCATC 967265 Query 40750 -GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | | |||| |||||| | |||||||| ||||| || | ||||| Sbjct 967266 AGACACTATTGAGAATGTTAAGGCAAAAATCCAGGACAAAGAAGGCATTCCACCAGACCA 967325 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || | || | || |||||||||||||| || | || || ||| || || || Sbjct 967326 ACAGAGATTGATATTTGCTGGCAAACAGCTGGAAGATGGCCGTACACTCTCTGATTATAA 967385 Query 40869 CATCCAGAA 40877 ||| ||||| Sbjct 967386 CATTCAGAA 967394 Score = 84.2 bits (92), Expect = 2e-11 Identities = 134/190 (71%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||||||||| || || || || || || ||||| ||||| | || || ||| | | Sbjct 965684 AATGCAAATATTTGTTAAGACTCTGACTGGAAAAACTATCACTTTGGAAGTGGAACCGTC 965743 Query 40749 CGACAGC-GTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | || |||| |||||| || || | || || || ||||| || | |||| Sbjct 965744 AGACACCATTGAGAACG-TCAAGGCCAAGATCCAAGATAAGGAAGGCATTCCTCCCGACC 965802 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 | || || | |||| ||| |||||||||||||| || | | ||||| || || | Sbjct 965803 AACAGAGATTGATCTTCGCTGGCAAACAGCTGGAAGATGGCAGAACCCTTTCAGATTATA 965862 Query 40868 ACATCCAGAA 40877 ||||||| || Sbjct 965863 ACATCCAAAA 965872 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/192 (71%), Gaps = 3/192 (2%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| ||||| || ||||| ||||| || ||| | || || ||| | | Sbjct 972961 AATGCAGATCTTCGTCAAAACTCTTACGGGAAAAACTATTACCCTTGAAGTGGAACCATC 973020 Query 40749 CGACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 || | | || || | | |||| || | | | ||||| || ||||| || | |||| Sbjct 973021 AGATACGATTGAGAATGTT-AAGGCAAGA-TCCAAGACAAGGAAGGCATTCCACCTGACC 973078 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || | |||| || || ||||||||||| || | || || ||| || |||| Sbjct 973079 AGCAGAGATTGATCTTTGCTGGTAAACAGCTGGAGGATGGCCGAACACTCTCAGATTACA 973138 Query 40868 ACATCCAGAAGG 40879 |||| ||||||| Sbjct 973139 ACATTCAGAAGG 973150 >seq1460 Length=1689650 Score = 82.4 bits (90), Expect = 8e-11 Identities = 133/189 (70%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA-C 40748 ||||| || ||||||||||| | ||||| ||||| || ||| | || || | ||||| | Sbjct 1136790 ATGCAGATTTTCGTAAAAACCTTAACGGGTAAAACGATAACCCTTGAGGTTG-AGCCAGC 1136732 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | ||| | |||| ||||||| || ||||| || || || | ||||| Sbjct 1136731 GGACACCATTGAAAATGTGAAGGCTAAAATTCAGGATAAAGAAGGAATTCCACCTGACCA 1136672 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||| | || || | ||| || || || || || || | | | || || || ||||| Sbjct 1136671 GCAAAGGCTTATTTTCGCTGGAAAGCAACTTGAAGATGGGAGAACTCTTTCAGATTACAA 1136612 Query 40869 CATCCAGAA 40877 |||||||| Sbjct 1136611 TATCCAGAA 1136603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515153728520160