Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ladona_20fulva_20[genbank_20GCA_5F000376725.1_202013-04-23] 10,166 sequences; 1,158,111,285 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq2170 179 3e-40 >seq2170 Length=2407512 Score = 179 bits (198), Expect = 3e-40 Identities = 244/335 (73%), Gaps = 4/335 (1%) Strand=Plus/Plus Query 97123 TGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCC 97182 || || |||||| | || |||| || || || |||||||| ||||| || || || || Sbjct 1141105 TGTGCAATCATATACGTCAATAATGAGTAACTTGCAATGTTGAAAGGAACTCCAAGACCA 1141164 Query 97183 ATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAACTGA 97242 | ||| ||||| |||||||| | ||| || ||||| | ||||| | |||||||||||| Sbjct 1141165 ACATCTGCTGACCTTTGATAGAGCTGGCAAGAAAGTTCTCCATTAGCAACATAAAACTGA 1141224 Query 97243 CTCAATACA-TGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAAGCACA 97301 ||| ||| ||||| || || || ||||| ||||||||||| ||||||||||| Sbjct 1141225 ACCAA-ACAGTGACAAGGTGGTAAAGCCATCTTTGGAACATCAGCTGGGTTCCAAGCACA 1141283 Query 97302 CATCAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTATCTGCTTTAATTG 97361 ||| || ||||| | ||| ||||||| || | || | | ||| || || ||||| Sbjct 1141284 CATTAATATTCTGCGATCATTTGGGTTGGTACGAATTTTTTCAATAATTTGAGCCAATTG 1141343 Query 97362 ATCAACGCCTTCTCCACCATAATTGTGCTTAAGA-CCTTGATATTCTGCTCCAAAATGCC 97420 ||| || |||| |||| ||| | | || | | | || ||||| || ||||| |||| Sbjct 1141344 ATCCACTCCTTTTCCAGAATAGTCATCATTCATAGTCATG-TATTCAGCCCCAAAGTGCC 1141402 Query 97421 TCCATTGGAATCCATAAACAGGTCCAAGGTCTCCT 97455 |||| || |||||||| ||||| || | ||| ||| Sbjct 1141403 TCCACTGAAATCCATACACAGGACCCAAGTCACCT 1141437 Score = 179 bits (198), Expect = 3e-40 Identities = 244/335 (73%), Gaps = 4/335 (1%) Strand=Plus/Plus Query 97123 TGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCC 97182 || || |||||| | || |||| || || || |||||||| ||||| || || || || Sbjct 1148799 TGTGCAATCATATACGTCAATAATGAGTAACTTGCAATGTTGAAAGGAACTCCAAGACCA 1148858 Query 97183 ATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAACTGA 97242 | ||| ||||| |||||||| | ||| || ||||| | ||||| | |||||||||||| Sbjct 1148859 ACATCTGCTGACCTTTGATAGAGCTGGCAAGAAAGTTCTCCATTAGCAACATAAAACTGA 1148918 Query 97243 CTCAATACA-TGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAAGCACA 97301 ||| ||| ||||| || || || ||||| ||||||||||| ||||||||||| Sbjct 1148919 ACCAA-ACAGTGACAAGGTGGTAAAGCCATCTTTGGAACATCAGCTGGGTTCCAAGCACA 1148977 Query 97302 CATCAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTATCTGCTTTAATTG 97361 ||| || ||||| | ||| ||||||| || | || | | ||| || || ||||| Sbjct 1148978 CATTAATATTCTGCGATCATTTGGGTTGGTACGAATTTTTTCAATAATTTGAGCCAATTG 1149037 Query 97362 ATCAACGCCTTCTCCACCATAATTGTGCTTAAGA-CCTTGATATTCTGCTCCAAAATGCC 97420 ||| || |||| |||| ||| | | || | | | || ||||| || ||||| |||| Sbjct 1149038 ATCCACTCCTTTTCCAGAATAGTCATCATTCATAGTCATG-TATTCAGCCCCAAAGTGCC 1149096 Query 97421 TCCATTGGAATCCATAAACAGGTCCAAGGTCTCCT 97455 |||| || |||||||| ||||| || | ||| ||| Sbjct 1149097 TCCACTGAAATCCATACACAGGACCCAAGTCACCT 1149131 Score = 86.0 bits (94), Expect = 4e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 97552 GTAGATCCTCTGATAAACCACAACAATTCTTCCACAACACCTCTCCAAAATACTCTCTTA 97611 || || ||||| || ||||| | |||||||||||| || ||| ||||||||||||||||| Sbjct 1141602 GTGGAACCTCTTATGAACCAAAGCAATTCTTCCACTACTCCTTTCCAAAATACTCTCTTA 1141661 Query 97612 GTTGTTAAGAGAGGAAA 97628 |||||||| | ||||| Sbjct 1141662 GTTGTTAATAAGGGAAA 1141678 Score = 86.0 bits (94), Expect = 4e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 97552 GTAGATCCTCTGATAAACCACAACAATTCTTCCACAACACCTCTCCAAAATACTCTCTTA 97611 || || ||||| || ||||| | |||||||||||| || ||| ||||||||||||||||| Sbjct 1149296 GTGGAACCTCTTATGAACCAAAGCAATTCTTCCACTACTCCTTTCCAAAATACTCTCTTA 1149355 Query 97612 GTTGTTAAGAGAGGAAA 97628 |||||||| | ||||| Sbjct 1149356 GTTGTTAATAAGGGAAA 1149372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346741034112620