Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ladona_20fulva_20[genbank_20GCA_5F000376725.1_202013-04-23] 10,166 sequences; 1,158,111,285 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq2170 125 1e-23 seq7337 118 2e-21 seq3560 109 8e-19 seq1460 109 8e-19 seq280 93.3 6e-14 >seq2170 Length=2407512 Score = 125 bits (138), Expect = 1e-23 Identities = 235/345 (68%), Gaps = 3/345 (1%) Strand=Plus/Plus Query 205441 TTAGTTAAATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACA 205500 ||||| | |||||||||||||| |||||||| ||||| |||| || || || || Sbjct 1141096 TTAGTAATGTGTGCAATCATATACGTCAATAATGAGTAACTTGCAATGTTGAAAGGAACT 1141155 Query 205501 CCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGTAAGATATTTATTATTAATT 205560 || | ||| | ||| ||||| |||||||| | || || | ||| | | |||| | Sbjct 1141156 CCAAGACCAACATCTGCTGACCTTTGATAGAGCTGGCAAGAAAGTTCTCCATTAGCA--- 1141212 Query 205561 ACATGAAATTGTACAAAACAATGACAAGGTGGTATAACCATATTTTCAACATCTATAGGA 205620 |||| ||| || || ||||| ||||||||||||| | |||| ||| |||||| || Sbjct 1141213 ACATAAAACTGAACCAAACAGTGACAAGGTGGTAAAGCCATCTTTGGAACATCAGCTGGG 1141272 Query 205621 TTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattttttattttatttatAATA 205680 ||||| || | || ||| | | | | || || | ||||| | ||||| Sbjct 1141273 TTCCAAGCACACATTAATATTCTGCGATCATTTGGGTTGGTACGAATTTTTTCAATAATT 1141332 Query 205681 TGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATATTTAGCA 205740 || | |||||||| | ||||| | ||| | || |||| || |||| ||| Sbjct 1141333 TGAGCCAATTGATCCACTCCTTTTCCAGAATAGTCATCATTCATAGTCATGTATTCAGCC 1141392 Query 205741 CCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCT 205785 ||||| || | ||| ||||| ||||| || ||||| || |||||| Sbjct 1141393 CCAAAGTGCCTCCACTGAAATCCATACACAGGACCCAAGTCACCT 1141437 Score = 125 bits (138), Expect = 1e-23 Identities = 235/345 (68%), Gaps = 3/345 (1%) Strand=Plus/Plus Query 205441 TTAGTTAAATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACA 205500 ||||| | |||||||||||||| |||||||| ||||| |||| || || || || Sbjct 1148790 TTAGTAATGTGTGCAATCATATACGTCAATAATGAGTAACTTGCAATGTTGAAAGGAACT 1148849 Query 205501 CCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGTAAGATATTTATTATTAATT 205560 || | ||| | ||| ||||| |||||||| | || || | ||| | | |||| | Sbjct 1148850 CCAAGACCAACATCTGCTGACCTTTGATAGAGCTGGCAAGAAAGTTCTCCATTAGCA--- 1148906 Query 205561 ACATGAAATTGTACAAAACAATGACAAGGTGGTATAACCATATTTTCAACATCTATAGGA 205620 |||| ||| || || ||||| ||||||||||||| | |||| ||| |||||| || Sbjct 1148907 ACATAAAACTGAACCAAACAGTGACAAGGTGGTAAAGCCATCTTTGGAACATCAGCTGGG 1148966 Query 205621 TTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattttttattttatttatAATA 205680 ||||| || | || ||| | | | | || || | ||||| | ||||| Sbjct 1148967 TTCCAAGCACACATTAATATTCTGCGATCATTTGGGTTGGTACGAATTTTTTCAATAATT 1149026 Query 205681 TGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATATTTAGCA 205740 || | |||||||| | ||||| | ||| | || |||| || |||| ||| Sbjct 1149027 TGAGCCAATTGATCCACTCCTTTTCCAGAATAGTCATCATTCATAGTCATGTATTCAGCC 1149086 Query 205741 CCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCT 205785 ||||| || | ||| ||||| ||||| || ||||| || |||||| Sbjct 1149087 CCAAAGTGCCTCCACTGAAATCCATACACAGGACCCAAGTCACCT 1149131 >seq7337 Length=451322 Score = 118 bits (130), Expect = 2e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| || || || || || || || | ||| |||| || Sbjct 240000 ATGCAGATCTTCGTGAAGACTCTTACCGGGAAGACCATCACCCTGGAGGTTGAGCCATCA 240059 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||||| ||| ||||| ||||| |||||||| || ||||| |||||||| ||| Sbjct 240060 GACACAATTGAAAATGTAAAAGCCAAAATCCAAGATAAGGAGGGTATCCCACCTGACCAA 240119 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || || || ||||| || || || | |||||| | || || || || |||||| Sbjct 240120 CAGAGACTCATCTTTGCTGGCAAGCAGCTTGAGGATGGACGTACCTTGTCCGACTATAAT 240179 Query 124719 ATTCAAAAAGAATCAACTTTGCAT-TTGGTTTTACGTTTACGAGGTGGT 124766 ||||| ||||||||||| | ||| ||| | ||| | || || |||||| Sbjct 240180 ATTCAGAAAGAATCAACACTTCATCTTGTTCTTAGGCTT-CGTGGTGGT 240227 >seq3560 Length=1522174 Score = 109 bits (120), Expect = 8e-19 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| || ||||| || ||||| || | || |||| | | Sbjct 965389 ATGCAGATCTTCGTCAAGACCCTTACAGGGAAGACTATTACCCTCGAAGTTGAGCCTTCT 965448 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| ||| | || |||||||||||||| || || || || || || ||| Sbjct 965449 GATACAATTGAAAATGTGAAGGCTAAAATTCAAGATAAGGAGGGAATCCCGCCCGACCAA 965508 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || || |||||||| ||||| |||||||| ||| | || ||| | ||| || || Sbjct 965509 CAGAGACTGATTTTTGCTGGAAAGCAATTAGAAGATGGCCGCACACTTTCAGACTACAAC 965568 Query 124719 ATTCAAAAAG 124728 |||||||||| Sbjct 965569 ATTCAAAAAG 965578 Score = 96.9 bits (106), Expect = 5e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || || | |||||||| ||||| |||||||||||| | || | || | Sbjct 970989 AATGCAGATCTTCGTTAAGACACTTACAGGGAAAACTATAACTCTTGAAGTGGAGCCGTC 971048 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| || | || || || ||||| || |||||||| |||||||| || Sbjct 971049 AGACACTATTGAGAACGTGAAGGCCAAGATCCAAGACAAGGAAGGTATTCCACCTGACCA 971108 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| ||| | || ||||||||||| || | || ||| | ||||| | ||||| || Sbjct 971109 ACAGAGGTTGATCTTTGCAGGAAAGCAGCTTGAAGATGGCCGAACCCTCTCTGATTACAA 971168 Query 124718 TATTCAAAAAG 124728 |||||||||| Sbjct 971169 CATTCAAAAAG 971179 Score = 96.9 bits (106), Expect = 5e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || | |||||||| ||||| |||||||||||| | || | ||| | Sbjct 971293 AATGCAAATTTTCGTCAAGACACTTACAGGGAAAACTATAACTCTTGAAGTGGAACCGTC 971352 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| || | || || || || |||||||| || || || ||||| || Sbjct 971353 AGACACTATTGAGAACGTGAAGGCCAAGATCCAGGATAAAGAGGGCATTCCTCCTGACCA 971412 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || || | || ||||||||||| || || |||||| |||| || | ||||| || Sbjct 971413 GCAGAGATTGATCTTTGCAGGAAAGCAGTTGGAGGATGGTCGTACCCTCTCTGATTACAA 971472 Query 124718 TATTCAAAAAG 124728 |||||||||| Sbjct 971473 CATTCAAAAAG 971483 >seq1460 Length=1689650 Score = 109 bits (120), Expect = 8e-19 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || |||| || |||| || ||||| ||||| | ||| |||| || Sbjct 1136790 ATGCAGATTTTCGTAAAAACCTTAACGGGTAAAACGATAACCCTTGAGGTTGAGCCAGCG 1136731 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || |||||||| ||||||||||| || |||||||| || Sbjct 1136730 GACACCATTGAAAATGTGAAGGCTAAAATTCAGGATAAAGAAGGAATTCCACCTGACCAG 1136671 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 |||||||||||||| || ||||| ||| | || ||| | |||| | |||||| ||| Sbjct 1136670 CAAAGGCTTATTTTCGCTGGAAAGCAACTTGAAGATGGGAGAACTCTTTCAGATTACAAT 1136611 Query 124719 ATTCAAAAAG 124728 || || |||| Sbjct 1136610 ATCCAGAAAG 1136601 Score = 91.5 bits (100), Expect = 2e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 124640 AGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCG 124699 ||| || || |||||||| || || | || ||||| || || || |||||||||| | Sbjct 729425 AGGCATTCCCCCTGATCAGCAGAGATTGATCTTTGCTGGTAAGCAGTTAGAGGATAATAA 729366 Query 124700 AACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACG 124759 ||| ||| ||||||||||||||| |||||||| || || || ||||| | | || || Sbjct 729365 AACTTTATCAGATTATAATATTCAGAAAGAATCCACCTTACACTTGGTACTGAGGTTGCG 729306 Query 124760 AGGTGGTATTAAAAA 124774 |||||| ||| || Sbjct 729305 TGGTGGTGCTAAGAA 729291 >seq280 Length=259806 Score = 93.3 bits (102), Expect = 6e-14 Identities = 133/192 (69%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 202868 CCAACATATCCATTTGGATCACGTCCATCTATAAAATATTTATCATTTAAATNNNNNNNN 202927 ||||||||||||||||| || | ||||| | | |||| |||||| | | Sbjct 230640 CCAACATATCCATTTGGGTCCCTGCCATCAAGATTATATCGATCATTGAGGTACACAGCA 230581 Query 202928 NNNNNNAATGCTTCTTCTGGTGATTTTGTCCATTCTAATAtttttttAGCCCAATACATT 202987 ||||| |||||| | | |||||| || || ||||||||||| |||||| Sbjct 230580 TCTGCCAATGCAGATTCTGGACTCTCAGACCATTCCAACATCTTTTTAGCCCAGTACATT 230521 Query 202988 CTTAAATATCCATGCATTTTACCATAGATAATCATTTGTTTTTGTGATGCATTCCATAAA 203047 || | | ||||||||||| || | | ||||||||| | || |||||||||||||| Sbjct 230520 CTGAGGAAACCATGCATTTTGCCCTCCTTCATCATTTGTATCTGAGATGCATTCCATAAG 230461 Query 203048 TTGTCATGAGTT 203059 | || |||||| Sbjct 230460 TCATCGTGAGTT 230449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755360000428800