Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ladona_20fulva_20[genbank_20GCA_5F000376725.1_202013-04-23] 10,166 sequences; 1,158,111,285 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq615 127 3e-24 seq2348 105 8e-18 >seq615 Length=2534639 Score = 127 bits (140), Expect = 3e-24 Identities = 156/211 (74%), Gaps = 3/211 (1%) Strand=Plus/Plus Query 33617 AATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATAT 33676 ||| | |||||| |||||||| | || ||||| || || | |||||| ||||||||||| Sbjct 1866965 AATAAGTTCGTTGGAAAACGTCAAACCAGGCATAAGTCCTCTCTTTTTCAGCCAAAATAT 1867024 Query 33677 GGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTC 33736 ||||| |||||||| |||||||| |||||||||||||| ||||| |||| | | || Sbjct 1867025 TGAAGCAAATGATCCCGAAAAGAAAATTCCTTCTACTGCTGCAAATGCAACCACACGTTC 1867084 Query 33737 TCCATAACCGGCGCTGTCA--TG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTAC 33793 || ||| || | ||| || ||||||| ||||| ||||||||| || Sbjct 1867085 ACCGAAACTTGCAGTATCACTTGCAATCCACTGCAATGCCCACGTAGCCTTCTTTCGAAC 1867144 Query 33794 ACAAGGCATCGTTTCTATGGCATTAAAGAGA 33824 ||| || | ||||| |||||||| || ||| Sbjct 1867145 ACACGGTAAGGTTTCAATGGCATTGAATAGA 1867175 Score = 118 bits (130), Expect = 1e-21 Identities = 130/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 33843 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 33902 ||||| | ||||| || || | |||| |||||||||||||||| ||||| ||||| Sbjct 1867268 TCTTTGATGTAAGTGTCTATGAGAAGAGAGTACATTTCCGAATGAACATTTTCCATGGCT 1867327 Query 33903 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCT 33962 || ||||||||||| ||||| || || || | ||| || |||||| || |||||||| Sbjct 1867328 ATTTGAAATCCGTAAAAACACCTTGCTTCTGGAATTTGAACTTCTTGACTGAATCGTTCC 1867387 Query 33963 GCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATG 34015 | | |||||| || || |||||||| || || ||||| || ||||| || Sbjct 1867388 ACCAGATTTTCGTTGACGATTCCATCCGATGCCGCGAAAAAAGCTAATACGTG 1867440 Score = 95.1 bits (104), Expect = 2e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 34068 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 34127 || || | ||| ||||||||||||||||||||||||||||| || || || ||||| ||| Sbjct 1867573 TTGGAAAGATCAACTTCTTCCACTGTCCAAAATGATGCCTCCGCTTTCTTGTACATCTTC 1867632 Query 34128 CAGATGTCATGATATTGGATTGGGAAAATAACAAA 34162 || || ||||| || || || ||||| || ||||| Sbjct 1867633 CAAATATCATGGTACTGAATCGGGAATATCACAAA 1867667 >seq2348 Length=1756034 Score = 105 bits (116), Expect = 8e-18 Identities = 160/225 (71%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 63177 GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGA 63236 || |||||| |||||| || || |||||| || | ||||| |||| ||||| ||| Sbjct 612048 GTGTACAATTTTTCGAATTCTTCACCCCAACAATCGAACAATCCTGGACTTTCATGGGGA 611989 Query 63237 CACATCAACGACCACTCTCCGTCATCCTTCA-CTCGTTTCATAAAGAGATCAGGAATCCA 63295 |||||||| ||| | || | | | |||| | |||||||| || | ||||||||||| Sbjct 611988 CACATCAAACTCCATACGCCATTA-CTTTCAACACGTTTCATGAACAAGTCAGGAATCCA 611930 Query 63296 AAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATC 63355 || || || ||||| | | ||| |||||| |||||||||||||| || || || Sbjct 611929 CAGGGCGTAGAAGAGATCACGGGCTCTCACTTCCTCTTTTCCTGTATTCTTCTTCAGGTC 611870 Query 63356 GAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63400 | || | | ||| |||| |||||| || || | || ||||| Sbjct 611869 CAAAAATTCAAAAATGTCAGCATGCCATGGCTCAAGATAAATGGC 611825 Score = 104 bits (114), Expect = 3e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 62988 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTA 63047 |||| | ||||||||| || |||||||| || ||||| ||||| | ||||| |||||| Sbjct 614263 TATTCAACTATCTCAGTACACAGATTACTGCATTTGATGGTTCCAAGGTTTTGCTGATTA 614204 Query 63048 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 63107 ||| | || || ||||| || || || || |||||||| |||||||| ||||||||| Sbjct 614203 GATTTTCTATTGCAAGCATCTTTGTATAGCATAAATGGAGTTCCAGTTTCTATCTGAGAT 614144 Query 63108 TCTAT 63112 || || Sbjct 614143 TCAAT 614139 Score = 100 bits (110), Expect = 4e-16 Identities = 155/218 (71%), Gaps = 5/218 (2%) Strand=Plus/Minus Query 63417 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63476 |||||||| || ||||| | |||||| || || || ||||| || | || ||| || | | Sbjct 611583 TTGTTTCCACCTTGATCCACGTATCTTGCCGTATTGTTATATACCCGCAGCATAGGTACA 611524 Query 63477 ATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAAT--ATTAC 63534 || || || || | ||||||||| || |||||||||| ||| | | | || | | | Sbjct 611523 ATTCCATTGGAAACACCATTGGTGCCAGAGATATAGCTACCAGTAGATCTGATGCAATGC 611464 Query 63535 TAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGT 63594 ||| | |||||||||| || || || || | | || ||| |||| ||||||| Sbjct 611463 ACATTCA--GACCTATTCCACCAGCTGACTTGGAAACCATCGCACATTGTTTCAACGTGT 611406 Query 63595 CATAGATGCCTTCTATGCTATCATCGATCAT-GTTAAG 63631 |||| || || || ||||| || || |||| |||||| Sbjct 611405 CATATATACCATCAATGCTGTCTTCCTTCATCGTTAAG 611368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629737565928480