Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ladona_20fulva_20[genbank_20GCA_5F000376725.1_202013-04-23] 10,166 sequences; 1,158,111,285 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq615 140 5e-28 seq2348 107 3e-18 seq7298 87.8 3e-12 >seq615 Length=2534639 Score = 140 bits (154), Expect = 5e-28 Identities = 159/211 (75%), Gaps = 3/211 (1%) Strand=Plus/Plus Query 49995 AATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATAT 50054 ||| ||||||||||||||||| | || ||||| || || | |||||| ||||||||||| Sbjct 1866965 AATAAGTTCGTTGGAAAACGTCAAACCAGGCATAAGTCCTCTCTTTTTCAGCCAAAATAT 1867024 Query 50055 GGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTC 50114 || |||||||| || |||||||| |||||||||||||| ||||| ||||| | | || Sbjct 1867025 TGAAGCAAATGATCCCGAAAAGAAAATTCCTTCTACTGCTGCAAATGCAACCACACGTTC 1867084 Query 50115 TCCATAACTGGCGCTGTCA--TG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTAC 50171 || |||| || | ||| || ||||||| ||||| ||||||||| || Sbjct 1867085 ACCGAAACTTGCAGTATCACTTGCAATCCACTGCAATGCCCACGTAGCCTTCTTTCGAAC 1867144 Query 50172 ACAAGGCATCGTTTCTATGGCATTAAAGAGA 50202 ||| || | ||||| |||||||| || ||| Sbjct 1867145 ACACGGTAAGGTTTCAATGGCATTGAATAGA 1867175 Score = 114 bits (126), Expect = 2e-20 Identities = 137/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 50221 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 50280 ||||| | ||||| || || | |||| |||||||||||||||| ||||| ||||| Sbjct 1867268 TCTTTGATGTAAGTGTCTATGAGAAGAGAGTACATTTCCGAATGAACATTTTCCATGGCT 1867327 Query 50281 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCA 50340 || ||||||||||| ||||| || || || | ||| || |||||| || |||||||| Sbjct 1867328 ATTTGAAATCCGTAAAAACACCTTGCTTCTGGAATTTGAACTTCTTGACTGAATCGTTCC 1867387 Query 50341 GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 50400 | | |||||| || || ||||| || || || ||||| || ||||| || || Sbjct 1867388 ACCAGATTTTCGTTGACGATTCCATCCGATGCCGCGAAAAAAGCTAATACGTGAGATAAG 1867447 Query 50401 AAATGT 50406 |||||| Sbjct 1867448 AAATGT 1867453 Score = 95.1 bits (104), Expect = 2e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 50446 TTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 50505 || || | ||| ||||||||||||||||||||||||||||| || || || ||||| ||| Sbjct 1867573 TTGGAAAGATCAACTTCTTCCACTGTCCAAAATGATGCCTCCGCTTTCTTGTACATCTTC 1867632 Query 50506 CAGATGTCATGATATTGGATTGGGAAAATAACAAA 50540 || || ||||| || || || ||||| || ||||| Sbjct 1867633 CAAATATCATGGTACTGAATCGGGAATATCACAAA 1867667 >seq2348 Length=1756034 Score = 107 bits (118), Expect = 3e-18 Identities = 161/227 (71%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 79848 TGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGG 79907 ||| || ||| |||||| || || |||||| |||| ||||| |||| ||| | || Sbjct 612049 TGTGTACAATTTTTCGAATTCTTCACCCCAACAATCGAACAATCCTGGACTTTCATGGGG 611990 Query 79908 ACACATCAACGACCACTCTCCATCATCCTTT--ACTCGTTTCATAAAGAGATCAGGAATC 79965 ||||||||| ||| | |||| | |||| || |||||||| || | ||||||||| Sbjct 611989 ACACATCAAACTCCATACGCCATTA--CTTTCAACACGTTTCATGAACAAGTCAGGAATC 611932 Query 79966 CAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGA 80025 || || || || ||||| | || ||| ||||| |||||||||||||| || || Sbjct 611931 CACAGGGCGTAGAAGAGATCACGGGCTCTCACTTCCTCTTTTCCTGTATTCTTCTTCAGG 611872 Query 80026 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 80072 || | || | | ||| |||| |||||| || || | || ||||| Sbjct 611871 TCCAAAAATTCAAAAATGTCAGCATGCCATGGCTCAAGATAAATGGC 611825 Score = 105 bits (116), Expect = 1e-17 Identities = 156/218 (72%), Gaps = 5/218 (2%) Strand=Plus/Minus Query 80089 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 80148 |||||||| || ||||| | |||||| || || || ||||| || | || ||| || | | Sbjct 611583 TTGTTTCCACCTTGATCCACGTATCTTGCCGTATTGTTATATACCCGCAGCATAGGTACA 611524 Query 80149 ATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTAC 80206 || |||||||| ||||||||| || ||||||||||| ||| | | | || | | | Sbjct 611523 ATTCCATTGGAAACACCATTGGTGCCAGAGATATAGCTACCAGTAGATCTGATGCAATGC 611464 Query 80207 TAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTAT 80266 ||| ||||||||||| || || || || | | || ||| |||| ||||| | Sbjct 611463 ACATT--CAGACCTATTCCACCAGCTGACTTGGAAACCATCGCACATTGTTTCAACGTGT 611406 Query 80267 CATAGATGCCCTCTATGCTATCATCAATCAT-GTTAAG 80303 |||| || || || ||||| || || |||| |||||| Sbjct 611405 CATATATACCATCAATGCTGTCTTCCTTCATCGTTAAG 611368 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 79660 TATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTA 79719 |||| | ||| ||||| || || ||||| || || |||||||| | ||||| |||||| Sbjct 614263 TATTCAACTATCTCAGTACACAGATTACTGCATTTGATGGTTCCAAGGTTTTGCTGATTA 614204 Query 79720 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGAT 79779 ||| | || || ||||| || || || || || ||||| |||||||| ||||||||| Sbjct 614203 GATTTTCTATTGCAAGCATCTTTGTATAGCATAAATGGAGTTCCAGTTTCTATCTGAGAT 614144 Query 79780 TCTAT 79784 || || Sbjct 614143 TCAAT 614139 >seq7298 Length=1178 Score = 87.8 bits (96), Expect = 3e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 78794 AGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATT 78853 |||||||||| || || || ||| | || || || ||||| ||||||| ||| | Sbjct 1045 AGAAATGCATGGAGGTGAGCTTTCCGTAATTTGGCTCAGCAATATGTATATTCAAAGACT 986 Query 78854 GACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAA 78913 | ||||| || ||||| ||||| |||||| ||||||||| || || | || || |||| Sbjct 985 GGCTTTGGTCAATGAATGCTCCTCTGTCTACAGCCATTTCAATTATGTTTTTCTGAGGAA 926 Query 78914 TTTCCCAAATAGT 78926 ||||||| | ||| Sbjct 925 TTTCCCATACAGT 913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718177525992240