Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ladona_20fulva_20[genbank_20GCA_5F000376725.1_202013-04-23] 10,166 sequences; 1,158,111,285 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq615 136 5e-27 seq2348 114 2e-20 >seq615 Length=2534639 Score = 136 bits (150), Expect = 5e-27 Identities = 158/211 (75%), Gaps = 3/211 (1%) Strand=Plus/Plus Query 42100 AATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATAT 42159 ||| | ||||||||||||||| | || ||||| || || | |||||| ||||||||||| Sbjct 1866965 AATAAGTTCGTTGGAAAACGTCAAACCAGGCATAAGTCCTCTCTTTTTCAGCCAAAATAT 1867024 Query 42160 AGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTC 42219 || ||||||||||| |||||||| |||||||||||||| ||||| |||| | | || Sbjct 1867025 TGAAGCAAATGATCCCGAAAAGAAAATTCCTTCTACTGCTGCAAATGCAACCACACGTTC 1867084 Query 42220 TCCATAACCGGCACTGTCA--TG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTAC 42276 || ||| ||| | ||| || ||||||| ||||| ||||||||| || Sbjct 1867085 ACCGAAACTTGCAGTATCACTTGCAATCCACTGCAATGCCCACGTAGCCTTCTTTCGAAC 1867144 Query 42277 ACAAGGCATCGTTTCTATGGCATTAAAGAGA 42307 ||| || | ||||| |||||||| || ||| Sbjct 1867145 ACACGGTAAGGTTTCAATGGCATTGAATAGA 1867175 Score = 105 bits (116), Expect = 9e-18 Identities = 127/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 42326 TCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCC 42385 ||||| | || || || || | |||| |||||||| ||||||| ||||| ||||| Sbjct 1867268 TCTTTGATGTAAGTGTCTATGAGAAGAGAGTACATTTCCGAATGAACATTTTCCATGGCT 1867327 Query 42386 ATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCA 42445 || ||||||||||| ||||| || || || | || || |||||| || |||||||| Sbjct 1867328 ATTTGAAATCCGTAAAAACACCTTGCTTCTGGAATTTGAACTTCTTGACTGAATCGTTCC 1867387 Query 42446 GCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATG 42498 | | ||||||||| || ||||| || || || ||||| || ||||| || Sbjct 1867388 ACCAGATTTTCGTTGACGATTCCATCCGATGCCGCGAAAAAAGCTAATACGTG 1867440 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 42551 TTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTC 42610 || || | ||| |||||||| || |||||||||||||| || || || || ||||| ||| Sbjct 1867573 TTGGAAAGATCAACTTCTTCCACTGTCCAAAATGATGCCTCCGCTTTCTTGTACATCTTC 1867632 Query 42611 CAGATATCATGATATTGAATTGGGAAAATAACAAA 42645 || |||||||| || ||||| ||||| || ||||| Sbjct 1867633 CAAATATCATGGTACTGAATCGGGAATATCACAAA 1867667 >seq2348 Length=1756034 Score = 114 bits (126), Expect = 2e-20 Identities = 158/218 (72%), Gaps = 5/218 (2%) Strand=Plus/Minus Query 72172 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 72231 |||||||| || ||||| | |||||| || || || ||||| || | || ||| || | | Sbjct 611583 TTGTTTCCACCTTGATCCACGTATCTTGCCGTATTGTTATATACCCGCAGCATAGGTACA 611524 Query 72232 ATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTGC 72289 || |||||||| |||||||||| || ||||||||||| ||| | | | || | ||| Sbjct 611523 ATTCCATTGGAAACACCATTGGTGCCAGAGATATAGCTACCAGTAGATCTGATGCAATGC 611464 Query 72290 TAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTAT 72349 ||| ||||||||||| || || || || | | || ||| |||| ||||| | Sbjct 611463 ACATT--CAGACCTATTCCACCAGCTGACTTGGAAACCATCGCACATTGTTTCAACGTGT 611406 Query 72350 CATAGATGCCCTCTATACTATCATCCATCAT-GTTAAG 72386 |||| || || || || || || ||| |||| |||||| Sbjct 611405 CATATATACCATCAATGCTGTCTTCCTTCATCGTTAAG 611368 Score = 104 bits (114), Expect = 3e-17 Identities = 158/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 71931 TGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGG 71990 ||| || ||| |||||| || || |||||| || | ||||| |||| ||||| || Sbjct 612049 TGTGTACAATTTTTCGAATTCTTCACCCCAACAATCGAACAATCCTGGACTTTCATGGGG 611990 Query 71991 ACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCA 72050 ||||||||| ||| | |||| | | || |||||||| || | ||||||||||| Sbjct 611989 ACACATCAAACTCCATACGCCATTACTTTCAACACGTTTCATGAACAAGTCAGGAATCCA 611930 Query 72051 AAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATC 72110 || || || ||||| | || ||| ||||| |||||||||||||| || || || Sbjct 611929 CAGGGCGTAGAAGAGATCACGGGCTCTCACTTCCTCTTTTCCTGTATTCTTCTTCAGGTC 611870 Query 72111 GAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 72155 | || | | ||| |||| |||||| || || | || ||||| Sbjct 611869 CAAAAATTCAAAAATGTCAGCATGCCATGGCTCAAGATAAATGGC 611825 Score = 102 bits (112), Expect = 1e-16 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 71752 ATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 71811 || ||||| || |||||||| || ||||||||||| | ||||| |||||| ||| | Sbjct 614254 ATCTCAGTACACAGATTACTGCATTTGATGGTTCCAAGGTTTTGCTGATTAGATTTTCTA 614195 Query 71812 TTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTAT 71867 || || ||||| || || || ||||| ||||| |||||||| ||||||||||| || Sbjct 614194 TTGCAAGCATCTTTGTATAGCATAAATGGAGTTCCAGTTTCTATCTGAGATTCAAT 614139 Score = 89.7 bits (98), Expect = 7e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 72772 TTTTTTGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCT 72831 || || |||||||| || ||||| || || || ||||||||||| || | |||||||| Sbjct 610484 TTCTTAGTTTCCTTATGAAGATTCGAAACCGCGATTCTGGCGGCAAGTACAGCATAATCG 610425 Query 72832 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGTT 72891 ||||||| ||||| |||||| ||| ||||||| || | | | || | ||||| || Sbjct 610424 GGATGTTTAGTAGTCATAGTGGCAGCTGTTTCTGCAGCTAAATTATCAAGCTCTACGGTG 610365 Query 72892 GTTACTCCA 72900 || || ||| Sbjct 610364 GTAACCCCA 610356 Score = 89.7 bits (98), Expect = 7e-13 Identities = 139/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 71374 GATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAAT 71433 || ||| ||| || || |||| ||| | || |||| |||||||| || ||||| Sbjct 617587 GAGCCTTGATAGGTTTCATATGCTCCAAGCTGCTCAGCTAACTCACAACTAGCTTCTAAG 617528 Query 71434 GCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCA 71493 || ||||||||||| ||||| || || | || || || | | ||| ||| || ||| Sbjct 617527 GCACCATAATAAATAGTTTCAAATATTTGTTTGTTCAGCTTTCTTGCCTCCTCACTGTCA 617468 Query 71494 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGT 71553 ||||| | | | |||||| | ||| || |||||||| || ||||| || || || Sbjct 617467 AATGGCATCCTCATCAAAATAAATGTGTCAGCCAATCCTTGGACACCAATTCCAATTGGC 617408 Query 71554 CTGTGTCTCTTATTAGAAA 71572 ||||| ||| | || |||| Sbjct 617407 CTGTGCCTCATGTTTGAAA 617389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671053914986160