Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ladona_20fulva_20[genbank_20GCA_5F000376725.1_202013-04-23] 10,166 sequences; 1,158,111,285 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq7337 113 3e-20 seq1460 104 2e-17 seq3560 95.1 9e-15 >seq7337 Length=451322 Score = 113 bits (124), Expect = 3e-20 Identities = 130/173 (75%), Gaps = 3/173 (2%) Strand=Plus/Minus Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 ||||| || |||||||||||| | ||||| | ||| || || ||||||||||||||| Sbjct 238464 TCTTCCAACTGTTTGCCAGCGAAAATCAATCTTTGCTGATCAGGGGGAATTCCTTCTTTG 238405 Query 15269 TCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATG 15328 || ||||||| ||||||| | || || |||||| ||| || || || || ||| Sbjct 238404 TCCTGAATTTTGGCCTTTACATTCTCAATAGTATCGGAGGCTTCGACTTCCAAAGTGATG 238345 Query 15329 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT--TGAAAA-TAAAAT 15378 || || || |||| |||||| || || || ||||| || |||||| |||||| Sbjct 238344 GTCTTCCCAGTCAAAGTTTTAACGAAGATCTGCATTTTCCTGAAAAGTAAAAT 238292 >seq1460 Length=1689650 Score = 104 bits (114), Expect = 2e-17 Identities = 139/191 (73%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 15174 CTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATA 15233 |||| || || |||||||| ||| ||||| | ||||| | ||| || |||||| | | Sbjct 1136601 CTTTCTGGATATTGTAATCTGAAAGAGTTCTCCCATCTTCAAGTTGCTTTCCAGCGAAAA 1136660 Query 15234 TCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTT 15293 | | | ||| ||||| ||||||||||||||| || |||||| ||| ||| ||| Sbjct 1136661 TAAGCCTTTGCTGGTCAGGTGGAATTCCTTCTTTATCCTGAATTTTAGCCTTCACATTTT 1136720 Query 15294 CTATGGTAT-CGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACA 15352 | ||||| | |||| || || || | ||| || |||||||| || | |||||||| Sbjct 1136721 CAATGGTGTCCGCT-GGCTCAACCTCAAGGGTTATCGTTTTACCCGTTAAGGTTTTTACG 1136779 Query 15353 AAAATTTGCAT 15363 ||||| ||||| Sbjct 1136780 AAAATCTGCAT 1136790 >seq3560 Length=1522174 Score = 95.1 bits (104), Expect = 9e-15 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 15174 CTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATA 15233 ||||||| ||||| ||||| || |||| | ||||| | |||||||||||| | | Sbjct 965874 CTTTTTGGATGTTATAATCTGAAAGGGTTCTGCCATCTTCCAGCTGTTTGCCAGCGAAGA 965815 Query 15234 TCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTT 15293 |||| | ||||||||| ||||| ||||| || || || ||| ||| || | | Sbjct 965814 TCAATCTCTGTTGGTCGGGAGGAATGCCTTCCTTATCTTGGATCTTGGCCTTGACGTTCT 965755 Query 15294 CTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAA 15353 | ||||| || ||| || || || || || ||||| || |||||||| || |||| Sbjct 965754 CAATGGTGTCTGACGGTTCCACTTCCAAAGTGATAGTTTTTCCAGTCAGAGTCTTAACAA 965695 Query 15354 AAATTTGCAT 15363 | |||||||| Sbjct 965694 ATATTTGCAT 965685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362134326676206