Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ladona_20fulva_20[genbank_20GCA_5F000376725.1_202013-04-23] 10,166 sequences; 1,158,111,285 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq3560 86.0 4e-12 >seq3560 Length=1522174 Score = 86.0 bits (94), Expect = 4e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 43932 CTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATA 43991 |||| ||||| |||||||| | | ||| |||| |||| ||||| || ||||||| Sbjct 967396 CTTTCTGAATGTTATAATCAGAGAGTGTACGGCCATCTTCCAGCTGTTTGCCAGCAAATA 967337 Query 43992 TCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAG 44051 |||| | || ||||| | || | |||||||| || |||||| || || | Sbjct 967336 TCAATCTCTGTTGGTCTGGTGGAATGCCTTCTTTGTCCTGGATTTTTGCCTTAACATTCT 967277 Query 44052 CAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAA 44111 ||| ||| |||| |||||||| || | || || || || || || | ||||| || | Sbjct 967276 CAATAGTGTCTGATGGCTCCACTTCCAGTGTGATGGTCTTTCCAGTCAGTGTCTTAACGA 967217 Query 44112 ATATTTGCAT 44121 |||||||||| Sbjct 967216 ATATTTGCAT 967207 Score = 86.0 bits (94), Expect = 4e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 43932 CTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATA 43991 |||||||||| || ||||| | ||| |||| ||||| || ||||||||||| | Sbjct 971483 CTTTTTGAATGTTGTAATCAGAGAGGGTACGACCATCCTCCAACTGCTTTCCTGCAAAGA 971424 Query 43992 TCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAG 44051 |||| | |||||||| |||| | || |||||||| || || || || | Sbjct 971423 TCAATCTCTGCTGGTCAGGAGGAATGCCCTCTTTATCCTGGATCTTGGCCTTCACGTTCT 971364 Query 44052 CAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAA 44111 ||| ||| |||| ||| ||||| || | || || ||||| || || | ||||| || | Sbjct 971363 CAATAGTGTCTGACGGTTCCACTTCAAGAGTTATAGTTTTCCCTGTAAGTGTCTTGACGA 971304 Query 44112 ATATTTGCAT 44121 | |||||||| Sbjct 971303 AAATTTGCAT 971294 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/192 (70%), Gaps = 4/192 (2%) Strand=Plus/Minus Query 43932 CTTTTTGAATATTATAATCGTTTAATTGACGCT--CATCGTCCAATTGTTTTCCTGCAAA 43989 ||||||| || |||||||| | || | || |||| |||| ||||| || || || Sbjct 965874 CTTTTTGGATGTTATAATC--TGAAAGGGTTCTGCCATCTTCCAGCTGTTTGCCAGCGAA 965817 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049 ||||| | || ||||| |||| | ||||| |||||| || || ||||| | Sbjct 965816 GATCAATCTCTGTTGGTCGGGAGGAATGCCTTCCTTATCTTGGATCTTGGCCTTGACGTT 965757 Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109 ||| || |||| ||| ||||| || | || || ||||| || || | |||||| || Sbjct 965756 CTCAATGGTGTCTGACGGTTCCACTTCCAAAGTGATAGTTTTTCCAGTCAGAGTCTTAAC 965697 Query 44110 AAATATTTGCAT 44121 |||||||||||| Sbjct 965696 AAATATTTGCAT 965685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354733643720568