Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ladona_20fulva_20[genbank_20GCA_5F000376725.1_202013-04-23] 10,166 sequences; 1,158,111,285 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1460 167 5e-36 seq7337 159 8e-34 seq3560 149 1e-30 seq615 122 2e-22 seq7481 95.1 3e-14 seq280 87.8 4e-12 >seq1460 Length=1689650 Score = 167 bits (184), Expect = 5e-36 Identities = 153/191 (80%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 104370 CTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAA 104429 ||||||| ||||| || || || |||||||| || ||||| ||||| |||||||| |||| Sbjct 1136601 CTTTCTGGATATTGTAATCTGAAAGAGTTCTCCCATCTTCAAGTTGCTTTCCAGCGAAAA 1136660 Query 104430 TTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTT 104489 | ||||| || || ||||| || |||||||||||||||||||| || || || ||||||| Sbjct 1136661 TAAGCCTTTGCTGGTCAGGTGGAATTCCTTCTTTATCCTGAATTTTAGCCTTCACATTTT 1136720 Query 104490 CTACGGTAT-CGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 | | ||| | |||| || || ||||| || || || || ||||| || | |||||||| Sbjct 1136721 CAATGGTGTCCGCT-GGCTCAACCTCAAGGGTTATCGTTTTACCCGTTAAGGTTTTTACG 1136779 Query 104549 AATATCTGCAT 104559 || |||||||| Sbjct 1136780 AAAATCTGCAT 1136790 Score = 91.5 bits (100), Expect = 3e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 104344 CCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACC 104403 ||| ||||| | ||||| || |||||||||||||||||||| || |||| |||| || Sbjct 729311 CCTCAGTACCAAGTGTAAGGTGGATTCTTTCTGAATATTATAATCTGATAAAGTTTTATT 729370 Query 104404 GTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCT 104458 || |||| || || |||||||| || | ||||| |||||||| || || ||| Sbjct 729371 ATCCTCTAACTGCTTACCAGCAAAGATCAATCTCTGCTGATCAGGGGGAATGCCT 729425 >seq7337 Length=451322 Score = 159 bits (176), Expect = 8e-34 Identities = 166/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 |||||||| || ||||| | ||| ||||||||||||||||||||||| || | || | Sbjct 240217 AGCCTAAGAACAAGATGAAGTGTTGATTCTTTCTGAATATTATAGTCGGACAAGGTACGT 240158 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || || || || || || |||||||| || || |||||||| ||||| || || || || Sbjct 240157 CCATCCTCAAGCTGCTTGCCAGCAAAGATGAGTCTCTGTTGGTCAGGTGGGATACCCTCC 240098 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 ||||| || || || |||||||||||||| | || || || || ||||| || || Sbjct 240097 TTATCTTGGATTTTGGCTTTTACATTTTCAATTGTGTCTGATGGCTCAACCTCCAGGGTG 240038 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || ||||| || || || || |||||||| Sbjct 240037 ATGGTCTTCCCGGTAAGAGTCTTCACGAAGATCTGCAT 240000 Score = 132 bits (146), Expect = 1e-25 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 104372 TTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATT 104431 ||||| ||||| ||||| || || || | || ||||| | ||||| ||||| ||||| Sbjct 238497 TTCTGGATATTGTAGTCTGAGAGCGTGCGGCCATCTTCCAACTGTTTGCCAGCGAAAATC 238438 Query 104432 AGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCT 104491 | || || |||||||| || ||||||||||| |||||||| || || |||||||| || Sbjct 238437 AATCTTTGCTGATCAGGGGGAATTCCTTCTTTGTCCTGAATTTTGGCCTTTACATTCTCA 238378 Query 104492 ACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAAT 104551 | |||||| | ||| || || | || || ||||| ||||| | ||||| || || Sbjct 238377 ATAGTATCGGAGGCTTCGACTTCCAAAGTGATGGTCTTCCCAGTCAAAGTTTTAACGAAG 238318 Query 104552 ATCTGCATTTT 104562 ||||||||||| Sbjct 238317 ATCTGCATTTT 238307 Score = 91.5 bits (100), Expect = 3e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 104437 CTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGT 104496 ||| |||||||| || || || ||||| || ||||| || |||||||||||||| | ||| Sbjct 239923 CTGCTGATCAGGTGGGATACCCTCTTTGTCTTGAATTTTGGCTTTTACATTTTCAATGGT 239864 Query 104497 ATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTG 104556 || || || ||||| || || || ||||| || ||||| || || || || ||||| Sbjct 239863 GTCTGATGGCTCAACCTCCAGGGTGATGGTCTTCCCGGTAAGAGTCTTCACGAAGATCTG 239804 Query 104557 CAT 104559 ||| Sbjct 239803 CAT 239801 >seq3560 Length=1522174 Score = 149 bits (164), Expect = 1e-30 Identities = 147/190 (77%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 104370 CTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAA 104429 |||| ||||| || ||||| || || || | || ||||||| ||| ||||||||||||| Sbjct 965578 CTTTTTGAATGTTGTAGTCTGAAAGTGTGCGGCCATCTTCTAATTGCTTTCCAGCAAAAA 965519 Query 104430 TTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTT 104489 | || |||||||| || || || ||||| || ||||| ||||| || || || ||||||| Sbjct 965518 TCAGTCTCTGTTGGTCGGGCGGGATTCCCTCCTTATCTTGAATTTTAGCCTTCACATTTT 965459 Query 104490 CTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAA 104549 | | ||||| ||| || || || || ||||||||||| || ||||| || || || | Sbjct 965458 CAATTGTATCAGAAGGCTCAACTTCGAGGGTAATAGTCTTCCCTGTAAGGGTCTTGACGA 965399 Query 104550 ATATCTGCAT 104559 | |||||||| Sbjct 965398 AGATCTGCAT 965389 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 104370 CTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAA 104429 |||| ||||| || || ||||| || || | ||| || || | || ||||| ||||| | Sbjct 971483 CTTTTTGAATGTTGTAATCAGAGAGGGTACGACCATCCTCCAACTGCTTTCCTGCAAAGA 971424 Query 104430 TTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTT 104489 | | ||||| || |||||||| || || ||||||||||| ||||| || || || || | Sbjct 971423 TCAATCTCTGCTGGTCAGGAGGAATGCCCTCTTTATCCTGGATCTTGGCCTTCACGTTCT 971364 Query 104490 CTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAA 104549 | | || || ||||| || || || || ||||| || || |||||||| || || | Sbjct 971363 CAATAGTGTCTGACGGTTCCACTTCAAGAGTTATAGTTTTCCCTGTAAGTGTCTTGACGA 971304 Query 104550 ATATCTGCATT 104560 | || |||||| Sbjct 971303 AAATTTGCATT 971293 Score = 89.7 bits (98), Expect = 1e-12 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 104372 TTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATT 104431 ||||| || || || ||||| ||||| | || ||||| || || ||||||||||| || Sbjct 969118 TTCTGTATGTTGTAATCAGAGAGAGTGCGCCCATCTTCCAGCTGCTTTCCAGCAAAGATC 969059 Query 104432 AGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCT 104491 | ||||| || ||||| || || ||||| || ||||| ||||| || || || || || Sbjct 969058 AATCTCTGCTGGTCAGGTGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTAACGTTCTCA 968999 Query 104492 ACGGTATCGCTAGGTTCTACCTCTAGTGT 104520 | ||||| ||||| || || || || Sbjct 968998 ATCGTATCTGATGGTTCCACTTCAAGAGT 968970 >seq615 Length=2534639 Score = 122 bits (134), Expect = 2e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 268877 GATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAA 268936 ||||| ||||| ||||||||||| || || ||| ||||||| || || ||||| ||| Sbjct 1867413 GATGGAATCGTCAACGAAAATCTGGTGGAACGATTCAGTCAAGAAGTTCAAATTCCAGAA 1867354 Query 268937 GCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGT 268996 || || |||||||||||||| || ||||| || |||||| ||||||| || |||||| | Sbjct 1867353 GCAAGGTGTTTTTACGGATTTCAAATAGCCATGGAAAATGTTCATTCGGAAATGTACTCT 1867294 Query 268997 CTATTAATAGATACTTATAT 269016 || | ||||| ||||| || Sbjct 1867293 CTTCTCATAGACACTTACAT 1867274 Score = 100 bits (110), Expect = 7e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 269122 TTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTT 269181 || ||| ||| | | ||||| ||||| || |||||||| || ||||||||||| || || Sbjct 1867091 TTTCGGTGAACGTGTGGTTGCATTTGCAGCAGTAGAAGGAATTTTCTTTTCGGGATCATT 1867032 Query 269182 TGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGA 269241 ||| | || |||||| |||| || ||||| |||||||| || || || || || ||||| Sbjct 1867031 TGCTTCAATATTTTGGCTGAAAAAGAGAGGACTTATGCCTGGTTTGACGTTTTCCAACGA 1866972 Query 269242 ATTGATAAGCAGGGACGAAG 269261 | | || ||||||||| Sbjct 1866971 ACTTATTTCGCGGGACGAAG 1866952 >seq7481 Length=673921 Score = 95.1 bits (104), Expect = 3e-14 Identities = 96/123 (78%), Gaps = 4/123 (3%) Strand=Plus/Plus Query 238766 AGGTTGTATGTGGTCAATATGTGGATTACACGA--TAGGGCATGGTCTGAGAGACCTATA 238823 ||| || |||||||||||||||||| | || || |||| ||| |||||||| | | Sbjct 292346 AGGCTGCATGTGGTCAATATGTGGAATCCATGACCAAGGG--TGGGCTGAGAGAGCAGTC 292403 Query 238824 TTTGGAAAAGTTAGATACATGAATTATGAAGGAACTAAGAAAAAATTTGATGTAAATGCT 238883 ||||||||| | | |||||||||||||||||| |||| ||| |||||||| |||| Sbjct 292404 TTTGGAAAAATCCGTTACATGAATTATGAAGGATGCAAGAGAAAGTTTGATGTGGCTGCT 292463 Query 238884 TTT 238886 ||| Sbjct 292464 TTT 292466 >seq280 Length=259806 Score = 87.8 bits (96), Expect = 4e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 238577 AACTCACGATCCCCTATGGAATTCCGCCCAGATACAAATGGTAAGACTAGGCAAAATGCA 238636 |||||||||| | |||||||| | | |||||||||||| | | ||||||||||| Sbjct 230449 AACTCACGATGACTTATGGAATGCATCTCAGATACAAATGATGAAGGAGGGCAAAATGCA 230508 Query 238637 TAGTTTCTTACGAATGTATTGGGCTAAAAAGATACTTGAATGGACT 238682 | ||||| | ||||||| |||||||||||||| | |||||| || Sbjct 230509 TGGTTTCCTCAGAATGTACTGGGCTAAAAAGATGTTGGAATGGTCT 230554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151248428199528