Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ladona_20fulva_20[genbank_20GCA_5F000376725.1_202013-04-23] 10,166 sequences; 1,158,111,285 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq3560 136 4e-27 seq7337 111 1e-19 >seq3560 Length=1522174 Score = 136 bits (150), Expect = 4e-27 Identities = 144/190 (76%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 94818 CCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGA 94877 ||||||| | ||||||||| | ||| || ||||||||||||||| || |||||| Sbjct 966179 CCTTTTGGATGTTATAATCAGAAAGAGTTCTGCCATCCTCCAGCTGTTTACCAGCAAAGA 966120 Query 94878 TTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGC 94937 | ||||| ||||| || || ||||| ||||| ||||| | || |||||||| ||| Sbjct 966119 TCAATCTCTGCTGGTCAGGTGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTAACGTTTT 966060 Query 94938 CGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAA 94997 | | |||||| | | || || |||| || || |||||||| ||||||||||| || | Sbjct 966059 CAATAGTGTCTGATGGTTCCACTTCAAGGGTAATAGTTTTTCCCGTAAGAGTTTTGACGA 966000 Query 94998 AGATCTGCAT 95007 |||||||||| Sbjct 965999 AGATCTGCAT 965990 Score = 109 bits (120), Expect = 5e-19 Identities = 145/198 (73%), Gaps = 5/198 (3%) Strand=Plus/Minus Query 94815 ATTCCTTT-TGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGC 94871 || ||||| || | ||| ||||| | | |||||| | ||||||||||||||| || Sbjct 967966 ATACCTTTCTGGATGTTGTAATC--TGAGAGTGTTCGGCCATCCTCCAGCTGTTTACCAG 967909 Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931 ||||||| ||||| ||||| || || ||||| ||||| ||||| | ||||||||||| | Sbjct 967908 CAAAGATCAATCTCTGCTGGTCAGGTGGAATGCCTTCCTTGTCCTGGATTTTTGCCTTAA 967849 Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991 | | | ||||| | | || || || | || || || |||||||| || || | Sbjct 967848 CATTCTCAATGGTGTCTGAAGGTTCCACTTCCAGAGTAATTGTCTTTCCAGTGAGTGTCT 967789 Query 94992 TCACAAAGATCTGCATGC 95009 | |||||||| ||||||| Sbjct 967788 TGACAAAGATTTGCATGC 967771 Score = 107 bits (118), Expect = 2e-18 Identities = 141/192 (73%), Gaps = 5/192 (3%) Strand=Plus/Minus Query 94818 CCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAA 94875 |||| || | ||| ||||| | | |||||| | ||||||||||||||| || |||| Sbjct 973150 CCTTCTGAATGTTGTAATC--TGAGAGTGTTCGGCCATCCTCCAGCTGTTTACCAGCAAA 973093 Query 94876 GATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGC 94935 ||| ||||| ||||| || || ||||| ||||| ||||| | | | ||||||| || Sbjct 973092 GATCAATCTCTGCTGGTCAGGTGGAATGCCTTCCTTGTCTTGGA-TCTTGCCTTAACATT 973034 Query 94936 GCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCAC 94995 | | || || | | || || |||| || || |||||||| ||||||||||| || Sbjct 973033 CTCAATCGTATCTGATGGTTCCACTTCAAGGGTAATAGTTTTTCCCGTAAGAGTTTTGAC 972974 Query 94996 AAAGATCTGCAT 95007 ||||||||||| Sbjct 972973 GAAGATCTGCAT 972962 Score = 104 bits (114), Expect = 2e-17 Identities = 138/190 (73%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 94820 TTTTGCACGTTATAATCGCTCATAGTGTT--GGAATCCTCCAGCTGTTTTCCGCCAAAGA 94877 ||||| | ||||||||| | | || ||| | ||| ||||||||||| || | |||| Sbjct 965872 TTTTGGATGTTATAATC--TGAAAGGGTTCTGCCATCTTCCAGCTGTTTGCCAGCGAAGA 965815 Query 94878 TTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGC 94937 | ||||| || || || |||||||| ||||| || || | || || ||||||||| Sbjct 965814 TCAATCTCTGTTGGTCGGGAGGAATGCCTTCCTTATCTTGGATCTTGGCCTTGACGTTCT 965755 Query 94938 CGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAA 94997 | | ||||| | | || || || | ||||| ||||||||||| ||||| || |||| Sbjct 965754 CAATGGTGTCTGACGGTTCCACTTCCAAAGTGATAGTTTTTCCAGTCAGAGTCTTAACAA 965695 Query 94998 AGATCTGCAT 95007 | || ||||| Sbjct 965694 ATATTTGCAT 965685 Score = 102 bits (112), Expect = 7e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| ||||||||||| || |||| || ||||| || || ||||| ||||| |||||||| Sbjct 967362 ATCTTCCAGCTGTTTGCCAGCAAATATCAATCTCTGTTGGTCTGGTGGAATGCCTTCTTT 967303 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||||||||||| || | | |||||| | | || || || | ||||| Sbjct 967302 GTCCTGGATTTTTGCCTTAACATTCTCAATAGTGTCTGATGGCTCCACTTCCAGTGTGAT 967243 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| |||||||| || || || || || || ||||| Sbjct 967242 GGTCTTTCCAGTCAGTGTCTTAACGAATATTTGCAT 967207 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| || ||||| ||||| ||||||| || || || || || || ||||||||||| || Sbjct 971145 ATCTTCAAGCTGCTTTCCTGCAAAGATCAACCTCTGTTGGTCAGGTGGAATACCTTCCTT 971086 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | || || ||||| ||| | | |||||| | | || || |||| || || Sbjct 971085 GTCTTGGATCTTGGCCTTCACGTTCTCAATAGTGTCTGACGGCTCCACTTCAAGAGTTAT 971026 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || ||||| || || || ||||||||||| Sbjct 971025 AGTTTTCCCTGTAAGTGTCTTAACGAAGATCTGCAT 970990 >seq7337 Length=451322 Score = 111 bits (122), Expect = 1e-19 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||| |||||| || | || || |||||||||||||| || ||||| |||||||| Sbjct 238465 ATCTTCCAACTGTTTGCCAGCGAAAATCAATCTTTGCTGATCAGGGGGAATTCCTTCTTT 238406 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | |||||| ||||| || | | ||| || | | ||||| || | ||||| Sbjct 238405 GTCCTGAATTTTGGCCTTTACATTCTCAATAGTATCGGAGGCTTCGACTTCCAAAGTGAT 238346 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || ||||| | |||||| || ||||||||||| Sbjct 238345 GGTCTTCCCAGTCAAAGTTTTAACGAAGATCTGCAT 238310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448234233395760