Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ladona_20fulva_20[genbank_20GCA_5F000376725.1_202013-04-23] 10,166 sequences; 1,158,111,285 total letters Query= NC_006658.1 Length=30655 Score E Sequences producing significant alignments: (Bits) Value seq6837 134 3e-27 seq312 129 1e-25 seq9547 123 5e-24 seq5726 116 7e-22 seq306 114 3e-21 seq223 113 9e-21 seq1838 102 2e-17 seq334 102 2e-17 seq8935 98.7 2e-16 seq7060 96.9 7e-16 seq1015 96.9 7e-16 seq2871 93.3 8e-15 seq5838 87.8 4e-13 seq8702 82.4 1e-11 seq307 82.4 1e-11 >seq6837 Length=1720922 Score = 134 bits (148), Expect = 3e-27 Identities = 212/304 (70%), Gaps = 0/304 (0%) Strand=Plus/Minus Query 4398 AGATCTACCTTTATGCCCAGAACATTTTGTACCACCTGGTAGCAAGCAACAAAAACTCAC 4457 ||||||||| | ||||||||| || | || || || | |||||| | ||||| Sbjct 1578601 AGATCTACCCCTTTGCCCAGAAAATAAAGCTCCCCCCGGAGGGAAGCAAAAGAAACTGTT 1578542 Query 4458 GACAACTCTGTACGATAAAAATAATTATGTTATTCACTATAAAAATTTGAAACAATGTTT 4517 ||||| || | ||||| | || ||||| |||||||||| ||||| || | | Sbjct 1578541 AACAACACTCGAAAATAAAGAAAAATATGTCATTCACTATATGAATTTAAAGCGGGCTAC 1578482 Query 4518 AGATTTAGGTTTAGTTCTTAAGAAAATACACCTAGTCTTGAAATTTGAGCAATCAGACTG 4577 | | ||| | |||| || ||| ||||| ||| | ||||| |||| | || Sbjct 1578481 CTCTCTCGGTCTTCTTCTCAAAAAAGTACACAGAGTGATTGAATTTAGTCAATTACCTTG 1578422 Query 4578 GCTCAAATCATATATCGATAAAAATACCGCATGCCGAAAACTAGCTAAGAATGAGTTCGa 4637 | | || |||||||| || || |||| | | ||||| ||||| || |||||||| Sbjct 1578421 GTTAAAGTCATATATAGACCTGAACACCGATCGTAGGAAACTGGCTAAAAACGAGTTCGA 1578362 Query 4638 aaaaaaCTTTTATAAATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATGTACG 4697 || | ||||| ||||||||||||||||| ||||||||||| || ||||| ||||| | Sbjct 1578361 GAAGGATTTTTACAAATTAATGAATAATGCCGTTTTTGGAAAAACCATGGAAAATGTGCA 1578302 Query 4698 AAAA 4701 |||| Sbjct 1578301 AAAA 1578298 >seq312 Length=136008 Score = 129 bits (142), Expect = 1e-25 Identities = 251/370 (68%), Gaps = 13/370 (4%) Strand=Plus/Minus Query 4342 GGCTACATCCTTGAAGTAGATCTACACTATCCTGAGAATTTACATGATC-------TACA 4394 || ||||| || ||||| || || | ||||| | || |||| |||| |||| Sbjct 104957 GGATACATTCTCGAAGTGGACCTTGAATATCCACAAAACCTACACGATCAGATTCCTACA 104898 Query 4395 CAAAGATCTACCTTTATGCCCAGAACATTTTGTACCACCTGGTAGCAAGCAACAAAAACT 4454 |||| ||||| | || || ||| || | |||||| || | ||||| |||||| Sbjct 104897 TTCAGATTTACCTCTTTGTCCGGAAAATAATACACCACCCGGCGGTAAGCATAGAAAACT 104838 Query 4455 CACGACAACTCTGTACGATAAAAATAATTATGTTATTCACTATAAAAATTTGAAACA--- 4511 || || ||| | ||||| | || || || || || || ||||| || || Sbjct 104837 ATTAACGACGCTGGAAAATAAAGAAAAATACGTAATACATTACGTGAATTTAAATCAGGC 104778 Query 4512 ATGTTTAGATTTAGGTTTAGTTCTTAAGAAAATACACCTAGTCTTGAAATTTGAGCAATC 4571 | || | | ||| | || || || || || ||| |||||| |||| || ||||| Sbjct 104777 AATTTCAC---TCGGTATCGTACTCAAAAAGATCCACAGAGTCTTAGAATTCGATCAATC 104721 Query 4572 AGACTGGCTCAAATCATATATCGATAAAAATACCGCATGCCGAAAACTAGCTAAGAATGA 4631 | |||| | || ||||| || ||| ||||||| | |||| | ||||| || | Sbjct 104720 ACCCTGGTTAAAGTCATACATAGATCTGAATACCGATCGAAGAAAGTTGGCTAAAAACAA 104661 Query 4632 GTTCGaaaaaaaCTTTTATAAATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAA 4691 |||||||| | ||||||||||| ||||| || |||||||| || ||||| |||||||| Sbjct 104660 ATTCGAAAAGGATTTTTATAAATTGATGAACAACGCGGTTTTCGGCAAGACAATGGAGAA 104601 Query 4692 TGTACGAAAA 4701 ||| |||||| Sbjct 104600 TGTGCGAAAA 104591 >seq9547 Length=152941 Score = 123 bits (136), Expect = 5e-24 Identities = 211/305 (69%), Gaps = 1/305 (0%) Strand=Plus/Minus Query 4398 AGATCTACCTTTATGCCCAGAACATTTTGTACCACCTGGTAGCAAGCAACAAAAACTCAC 4457 ||| || || |||| |||||| || || || || | |||||| ||||| | Sbjct 145890 AGACCTGCCCCTATGTCCAGAAAATAAAGTTCCCCCGACGGGTAAGCAAAAAAAAAATAT 145831 Query 4458 -GACAACTCTGTACGATAAAAATAATTATGTTATTCACTATAAAAATTTGAAACAATGTT 4516 ||||||||| | ||||| | || ||| | |||||||| ||||| || || | Sbjct 145830 TGACAACTCTCGAAAATAAAGAAAAATATATCATTCACTACGTGAATTTAAAGCAGGCTA 145771 Query 4517 TAGATTTAGGTTTAGTTCTTAAGAAAATACACCTAGTCTTGAAATTTGAGCAATCAGACT 4576 | | | ||| | | || | || || || ||| | ||||||| || | || Sbjct 145770 TTTCTCTTGGTCTCATACTCAGAAAGATCCATGGAGTTATTCAATTTGATCAGTTTCCCT 145711 Query 4577 GGCTCAAATCATATATCGATAAAAATACCGCATGCCGAAAACTAGCTAAGAATGAGTTCG 4636 || | ||||| || |||||| ||| || | | || |||||||||| || ||||| |||| Sbjct 145710 GGTTAAAATCGTACATCGATCTAAACACAGAACGCAGAAAACTAGCCAATAATGATTTCG 145651 Query 4637 aaaaaaaCTTTTATAAATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATGTAC 4696 |||| | || |||||||| ||||| ||||| || ||||||||||| ||||| ||||| | Sbjct 145650 AAAAGGATTTCTATAAATTGATGAACAATGCAGTATTTGGAAAGACTATGGAAAATGTGC 145591 Query 4697 GAAAA 4701 ||||| Sbjct 145590 GAAAA 145586 >seq5726 Length=1835370 Score = 116 bits (128), Expect = 7e-22 Identities = 244/362 (67%), Gaps = 4/362 (1%) Strand=Plus/Plus Query 4342 GGCTACATCCTTGAAGTAGATCTACACTATCCTGAGAATTTACATGATCTACACAAAGAT 4401 || ||||| || |||| || || | ||||| | || |||| ||| || |||| Sbjct 70627 GGATACATTCTCAAAGTGGACCTTGAATATCCACAAAACCTACACGATGAGCATTCAGAT 70686 Query 4402 CTACCTTTATGCCCAGAACATTTTGTACCACCTGGTAGCAAGCAACAAAAACTCACGACA 4461 ||||| | || || ||| || | |||||| || | ||||| |||||| || Sbjct 70687 TTACCTCTTTGTCCGGAAAATAATACACCACCCGGCGGTAAGCATAGAAAACTGTTAACG 70746 Query 4462 ACTCTGTACGATAAAAATAATTATGTTATTCACTATAAAAATTTGAAACAATG--TTTAG 4519 | ||| | ||||| | || | || || || || | ||||| || || ||| Sbjct 70747 ATGCTGGAAAATAAAGAAAAAAACGTAATACATTACATGAATTTAAATCAGGCAATTTCA 70806 Query 4520 ATTTAGGTTTAGTTCTTAAGAAAATACACCTAGTCTTGAAATTTGAGCAATCAGACTGGC 4579 | | || | || || || || || ||| |||||| |||| || ||||| |||| Sbjct 70807 CTCT--GTATCGTACTCAAAAAGATCCACAGAGTCTTAGAATTCGATCAATCGCCCTGGT 70864 Query 4580 TCAAATCATATATCGATAAAAATACCGCATGCCGAAAACTAGCTAAGAATGAGTTCGaaa 4639 | || || || || ||| ||||||| | |||| ||||| || || ||||||| Sbjct 70865 TAAAGTCGTACATAGATCTGAATACCGATCGTAGAAAGTCGGCTAAAAACGAATTCGAAA 70924 Query 4640 aaaaCTTTTATAAATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATGTACGAA 4699 | | ||||||||||| ||||| || ||||||||||| ||||| ||||||||||| |||| Sbjct 70925 AGGATTTTTATAAATTGATGAACAACGCGGTTTTTGGCAAGACTATGGAGAATGTGCGAA 70984 Query 4700 AA 4701 || Sbjct 70985 AA 70986 >seq306 Length=189319 Score = 114 bits (126), Expect = 3e-21 Identities = 126/168 (75%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 4534 CTTAAGAAAATACACCTAGTCTTGAAATTTGAGCAATCAGACTGGCTCAAATCATATATC 4593 || || |||||||| ||| || ||||| || | |||| | |||||||| ||| Sbjct 32780 CTAAAAAAAATACATAGAGTGTTAGAATTTAGTCAGTTGCTCTGGTTAAAATCATACATC 32721 Query 4594 GATAAAAATACCGCATGCCGAAAACTAGCTAAGAATGAGTTCGaaaaaaaCTTTTATAAA 4653 || ||||| | | | | ||||| || || ||||| ||||| || | ||||||||| Sbjct 32720 AATCTCAATACAGAACGTAGGAAACTGGCCAATAATGATTTCGAGAAGGATTTTTATAAA 32661 Query 4654 TTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATGTACGAAAA 4701 ||||||||||| |||||||||| ||||| |||||||| ||||||||| Sbjct 32660 TTAATGAATAACGCGGTTTTTGATAAGACTATGGAGAACGTACGAAAA 32613 >seq223 Length=150141 Score = 113 bits (124), Expect = 9e-21 Identities = 116/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 4550 TAGTCTTGAAATTTGAGCAATCAGACTGGCTCAAATCATATATCGATAAAAATACCGCAT 4609 ||||||| |||| || |||||| |||| | || || || || ||| ||||||| Sbjct 109912 TAGTCTTAGAATTCGATCAATCACCCTGGTTAAAGTCGTACATAGATCTGAATACCGATC 109853 Query 4610 GCCGAAAACTAGCTAAGAATGAGTTCGaaaaaaaCTTTTATAAATTAATGAATAATGCGG 4669 | |||| |||||||| || |||||||| | ||||||||||| ||||| || |||| Sbjct 109852 GAAGAAAGTCGGCTAAGAACGAATTCGAAAAGGATTTTTATAAATTGATGAACAACGCGG 109793 Query 4670 TTTTTGGAAAGACGATGGAGAATGTACGAAAA 4701 ||||||| ||||| ||||||||||| | |||| Sbjct 109792 TTTTTGGCAAGACTATGGAGAATGTGCAAAAA 109761 >seq1838 Length=1077277 Score = 102 bits (112), Expect = 2e-17 Identities = 113/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 4551 AGTCTTGAAATTTGAGCAATCAGACTGGCTCAAATCATATATCGATAAAAATACCGCATG 4610 |||| | ||||||| || ||| |||| | ||||| || || ||| |||| | | Sbjct 753894 AGTCATAGAATTTGATCAGTCACCCTGGTTGAAATCTTACATAGATTTGAATAACAATCG 753953 Query 4611 CCGAAAACTAGCTAAGAATGAGTTCGaaaaaaaCTTTTATAAATTAATGAATAATGCGGT 4670 | | ||||||| || ||||| |||||| | |||||||||||||| ||||||| ||| Sbjct 753954 AAGGATGTTAGCTAAAAACGAGTTTGAAAAAGATTTTTATAAATTAATAAATAATGTGGT 754013 Query 4671 TTTTGGAAAGACGATGGAGAATGTACGAAAA 4701 |||||| || || ||||||||||| ||||| Sbjct 754014 TTTTGGCAATACTATGGAGAATGTTAGAAAA 754044 >seq334 Length=319932 Score = 102 bits (112), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 4480 AATTATGTTATTCACTATAAAAATTTGAAACAATGTTTAGATTTAGGTTTAGTTCTTAAG 4539 || ||| ||| || ||| ||| || |||||| | | ||||||| | |||| || Sbjct 268762 AAATATACTATCCATTATGTAAACTTAAAACAAGCTCTTTCTTTAGGTATCATTCTCAAA 268821 Query 4540 AAAATACACCTAGTCTTGAAATTTGAGCAATCAGACTGGCTCAAATCATATATCGATAAA 4599 || ||||| || | ||||| |||||| ||| | ||||| || || ||| | Sbjct 268822 AAGGTACACAGGGTTATAGAATTTTGCCAATCACCTTGGTTAAAATCGTACATTGATCTA 268881 Query 4600 AATACCGCATGCCGAAAACTAGCTAAGAATGAGTTCGaaaaaaaCTTTTATAAATTAATG 4659 || || | || ||||| | || || ||||| || ||||| | || |||||||||||| Sbjct 268882 AACACTGATTGAAGAAAATTGGCAAATAATGATTTTGAAAAGGATTTCTATAAATTAATG 268941 Query 4660 AATAATGCGGTTTTTGGAAAGACGATGGAGAATGT-ACGAAAAT-ATAAA 4707 ||||||| ||||||| || |||||||| || || | |||||| ||||| Sbjct 268942 AATAATGTTCTTTTTGGGAAAACGATGGAAAACGTGAGGAAAATAATAAA 268991 >seq8935 Length=155667 Score = 98.7 bits (108), Expect = 2e-16 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 4561 TTTGAGCAATCAGACTGGCTCAAATCATATATCGATAAAAATACCGCATGCCGAAAACTA 4620 ||| ||||||| | ||| | ||| | ||||||||| |||| | | | ||||| | Sbjct 38437 TTTAAGCAATCTGCATGGATGAAACCCTATATCGATTTAAATTCAGAAAAAAGAAAATTG 38496 Query 4621 GCTAAGAATGAGTTCGaaaaaaaCTTTTATAAATTAATGAATAATGCGGTTTTTGGAAAG 4680 ||| ||||| ||||||||| |||||| ||||| |||||||| | ||||| || || Sbjct 38497 GCTCGAAATGATTTCGAAAAAGACTTTTTCAAATTGATGAATAACTCAGTTTTCGGCAAA 38556 Query 4681 ACGATGGAGAATGTACGAAAATATAAAGATATATATTTA 4719 |||||||||||||| || ||| ||| || || | ||| Sbjct 38557 ACGATGGAGAATGTTCGTAAAAGAAAAAATTTAGAATTA 38595 >seq7060 Length=307428 Score = 96.9 bits (106), Expect = 7e-16 Identities = 110/144 (76%), Gaps = 4/144 (3%) Strand=Plus/Minus Query 5302 GATTTGTAAACTCTCGCCACATTTTCGTCTT--AAGTGTTCTATTGAAACGTTCACATAT 5359 || ||||||||| | |||||||||| |||| ||| ||||||||||| | |||| | Sbjct 3230 GAATTGTAAACTGTTTCCACATTTTC-TCTTTCAAG-GTTCTATTGAATCTTTCAACAAC 3173 Query 5360 GGATGCTTTGAGATTGCTGAATGTTGAATACAGATTTATCTTGTGCTGCTTCATCAGATC 5419 |||||||| | | || || |||||||| ||||||| || || || ||||||| || Sbjct 3172 AGATGCTTTTAATTCACTAAAAGTTGAATAATGATTTATGTTTTGTTGTTTCATCAATTC 3113 Query 5420 TTTGAATTCTTTGTTGTAAAACTC 5443 ||| || |||||||| ||||| || Sbjct 3112 TTTAAAGTCTTTGTTATAAAATTC 3089 >seq1015 Length=1431337 Score = 96.9 bits (106), Expect = 7e-16 Identities = 102/130 (78%), Gaps = 6/130 (5%) Strand=Plus/Minus Query 4575 CTGGCTCAAATCATATATCGATAAAAATACCGCATGCCGAAA-AC--TAGCTAAGAATGA 4631 |||| | |||||||| || ||| |||||| || |||| || ||||||| || || Sbjct 909508 CTGGTTAAAATCATAGATAGATTTGAATACCA-AT--CGAAGGACGTTAGCTAAAAACGA 909452 Query 4632 GTTCGaaaaaaaCTTTTATAAATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAA 4691 ||| |||||| | |||||||||||||||||||| || |||||||| ||||| || || || Sbjct 909451 GTTTGAAAAAGATTTTTATAAATTAATGAATAACGCAGTTTTTGGCAAGACTATAGAAAA 909392 Query 4692 TGTACGAAAA 4701 ||| ||||| Sbjct 909391 TGTTAGAAAA 909382 >seq2871 Length=927366 Score = 93.3 bits (102), Expect = 8e-15 Identities = 107/143 (75%), Gaps = 1/143 (1%) Strand=Plus/Minus Query 4559 AATTTGAGCAATCAGACTGGCTCAAATCATATATCGATAAAAATACCGCATGCCGAAAAC 4618 ||||| |||||| ||| | |||||||| || ||| ||| ||| | ||||| Sbjct 160300 AATTTAGTCAATCACCTTGGTT-AAATCATACATTGATCTAAACACCAATCGAAGAAAAG 160242 Query 4619 TAGCTAAGAATGAGTTCGaaaaaaaCTTTTATAAATTAATGAATAATGCGGTTTTTGGAA 4678 | || | || || |||||||| | || |||||||| |||||||| |||||||| || | Sbjct 160241 TTGCGAGTAACGATTTCGAAAAGGATTTCTATAAATTGATGAATAACGCGGTTTTCGGCA 160182 Query 4679 AGACGATGGAGAATGTACGAAAA 4701 |||| ||||||||||| |||||| Sbjct 160181 AGACTATGGAGAATGTGCGAAAA 160159 >seq5838 Length=276266 Score = 87.8 bits (96), Expect = 4e-13 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 4489 ATTCACTATAAAAATTTGAAACAATGTTTAGATTTAGGTTTAGTTCTTAAGAAAATACAC 4548 || || ||| ||| || |||||| | | ||||||| |||| || || ||||| Sbjct 254976 ATCCATTATGTAAACTTAAAACAAGCTCTTTCTTTAGGTAACATTCTCAAAAAGGTACAC 254917 Query 4549 CTAGTCTTGAAATTTGAGCAATCAGACTGGCTCAAATCATATATCGATAAAAATACCGCA 4608 || | ||||| ||| || ||| | ||||| || || ||| ||| |||| Sbjct 254916 AGGGTGATAGAATTTAGCCAAACACCTTGGTTAAAATCGTACATTGATTTAAACACCGAT 254857 Query 4609 TGCCGAAAACTAGCTAAGAATGAGTTCGaaaaaaaCTTTTATAAATTAATGAATAATGCG 4668 | ||||| |||| | || || |||||||| | ||||||||| | |||||||| || Sbjct 254856 CGAAGAAAAGTAGCGAGTAACGATTTCGAAAAGGATTTTTATAAACTGATGAATAACGCC 254797 Query 4669 GTTTTTGGAAAGACGATGGAGAATGTACGAAAA 4701 || |||| || || ||||| |||||||||||| Sbjct 254796 GTAATTGGGAAAACTATGGAAAATGTACGAAAA 254764 >seq8702 Length=265074 Score = 82.4 bits (90), Expect = 1e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 4559 AATTTGAGCAATCAGACTGGCTCAAATCATATATCGATAAAAATACCGCATGCCGAAAAC 4618 ||||| |||||| ||| | ||||| || || ||| ||| || | | ||||| Sbjct 248889 AATTTAGCCAATCACCTTGGTTAAAATCGTACATTGATTTAAACACTGATCGAAGAAAAG 248830 Query 4619 TAGCTAAGAATGAGTTCGaaaaaaaCTTTTATAAATTAATGAATAATGCGGTTTTTGGAA 4678 |||| | || || |||||||| | || || ||||| |||||||| || || ||||| | Sbjct 248829 TAGCGAGTAACGATTTCGAAAAGGATTTCTACAAATTGATGAATAACGCCGTATTTGGGA 248770 Query 4679 AGACGATGGAGAATGTACGAAAA 4701 | || ||||| |||||||||||| Sbjct 248769 AAACTATGGAAAATGTACGAAAA 248747 >seq307 Length=308934 Score = 82.4 bits (90), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 1/92 (1%) Strand=Plus/Minus Query 4610 GCCGAAAACTAGCTAAGAATGAGTTCGaaaaaaaCTTTTATAAATTAATGAATAATGCGG 4669 || ||||| | || || ||||| || ||||| | || ||||||||||||||||| || | Sbjct 297127 GCAGAAAAATGGC-AATAATGATTTTGAAAAGGATTTCTATAAATTAATGAATAACGCCG 297069 Query 4670 TTTTTGGAAAGACGATGGAGAATGTACGAAAA 4701 | ||||| || || ||||| |||||||||||| Sbjct 297068 TATTTGGGAAAACTATGGAAAATGTACGAAAA 297037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97962572407964