Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ladona_20fulva_20[genbank_20GCA_5F000376725.1_202013-04-23] 10,166 sequences; 1,158,111,285 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq615 136 5e-27 seq2348 116 5e-21 seq7298 86.0 8e-12 >seq615 Length=2534639 Score = 136 bits (150), Expect = 5e-27 Identities = 158/211 (75%), Gaps = 3/211 (1%) Strand=Plus/Plus Query 33339 AATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATAT 33398 ||| ||||||||||||||||| | || ||||| || || | |||||| ||||||||||| Sbjct 1866965 AATAAGTTCGTTGGAAAACGTCAAACCAGGCATAAGTCCTCTCTTTTTCAGCCAAAATAT 1867024 Query 33399 GGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTC 33458 ||||| |||||||| |||||||| |||||||||||||| ||||| |||| | | || Sbjct 1867025 TGAAGCAAATGATCCCGAAAAGAAAATTCCTTCTACTGCTGCAAATGCAACCACACGTTC 1867084 Query 33459 TCCATAACCGGCGCTGTCA--TG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTAC 33515 || ||| || | ||| || ||||||| ||||| ||||||||| || Sbjct 1867085 ACCGAAACTTGCAGTATCACTTGCAATCCACTGCAATGCCCACGTAGCCTTCTTTCGAAC 1867144 Query 33516 ACAAGGCATCGTTTCTATGGCATTAAAGAGA 33546 ||| || | ||||| |||||||| || ||| Sbjct 1867145 ACACGGTAAGGTTTCAATGGCATTGAATAGA 1867175 Score = 123 bits (136), Expect = 3e-23 Identities = 131/173 (76%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 33565 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 33624 ||||| | ||||| || || | |||| |||||||||||||||| ||||| ||||| Sbjct 1867268 TCTTTGATGTAAGTGTCTATGAGAAGAGAGTACATTTCCGAATGAACATTTTCCATGGCT 1867327 Query 33625 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCC 33684 || ||||||||||| ||||| || || || | ||| || |||||| || ||||||||| Sbjct 1867328 ATTTGAAATCCGTAAAAACACCTTGCTTCTGGAATTTGAACTTCTTGACTGAATCGTTCC 1867387 Query 33685 GCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATG 33737 ||| |||||| || || ||||| || || || ||||| || ||||| || Sbjct 1867388 ACCAGATTTTCGTTGACGATTCCATCCGATGCCGCGAAAAAAGCTAATACGTG 1867440 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 33790 TTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTC 33849 || || | ||| ||||||||||||||||||||||||||||| || || || ||||| ||| Sbjct 1867573 TTGGAAAGATCAACTTCTTCCACTGTCCAAAATGATGCCTCCGCTTTCTTGTACATCTTC 1867632 Query 33850 CAGATGTCATAATATTGGATTGGGAAAATAACAAA 33884 || || |||| || || || ||||| || ||||| Sbjct 1867633 CAAATATCATGGTACTGAATCGGGAATATCACAAA 1867667 >seq2348 Length=1756034 Score = 116 bits (128), Expect = 5e-21 Identities = 163/226 (72%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 63125 TGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGG 63184 ||| |||||| |||||| || || |||||| || | |||||| |||| ||||| || Sbjct 612049 TGTGTACAATTTTTCGAATTCTTCACCCCAACAATCGAACAATCCTGGACTTTCATGGGG 611990 Query 63185 ACACATCAACGACCACTCTCCGTCATCCTTCA-CTCGTTTCATAAAGAGATCAGGAATCC 63243 ||||||||| ||| | || | | | |||| | |||||||| || | |||||||||| Sbjct 611989 ACACATCAAACTCCATACGCCATTA-CTTTCAACACGTTTCATGAACAAGTCAGGAATCC 611931 Query 63244 AAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGAT 63303 | || || || ||||| | || ||| |||||| |||||||||||||| || || | Sbjct 611930 ACAGGGCGTAGAAGAGATCACGGGCTCTCACTTCCTCTTTTCCTGTATTCTTCTTCAGGT 611871 Query 63304 CGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63349 | | || | | ||| |||| |||||| || || | || ||||| Sbjct 611870 CCAAAAATTCAAAAATGTCAGCATGCCATGGCTCAAGATAAATGGC 611825 Score = 109 bits (120), Expect = 7e-19 Identities = 157/218 (72%), Gaps = 5/218 (2%) Strand=Plus/Minus Query 63366 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63425 |||||||| || ||||| | |||||| || || || ||||| || | || ||| || | | Sbjct 611583 TTGTTTCCACCTTGATCCACGTATCTTGCCGTATTGTTATATACCCGCAGCATAGGTACA 611524 Query 63426 ATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAAT--ATTAC 63483 || || || || | ||||||||| || ||||||||||| ||| | | | || | | | Sbjct 611523 ATTCCATTGGAAACACCATTGGTGCCAGAGATATAGCTACCAGTAGATCTGATGCAATGC 611464 Query 63484 TAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGT 63543 ||| ||||||||||| || || || || | | || ||| |||| ||||||| Sbjct 611463 ACATT--CAGACCTATTCCACCAGCTGACTTGGAAACCATCGCACATTGTTTCAACGTGT 611406 Query 63544 CATAGATACCCTCTATGCTATCATCGATCAT-GTTAAG 63580 |||| ||||| || ||||| || || |||| |||||| Sbjct 611405 CATATATACCATCAATGCTGTCTTCCTTCATCGTTAAG 611368 Score = 104 bits (114), Expect = 3e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 62937 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTA 62996 |||| | ||||||||| || |||||||| || ||||| ||||| | ||||| |||||| Sbjct 614263 TATTCAACTATCTCAGTACACAGATTACTGCATTTGATGGTTCCAAGGTTTTGCTGATTA 614204 Query 62997 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 63056 ||| | || || ||||| || || || || |||||||| |||||||| ||||||||| Sbjct 614203 GATTTTCTATTGCAAGCATCTTTGTATAGCATAAATGGAGTTCCAGTTTCTATCTGAGAT 614144 Query 63057 TCTAT 63061 || || Sbjct 614143 TCAAT 614139 Score = 84.2 bits (92), Expect = 3e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 63966 TTTTTTGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCC 64025 || || |||||||| || ||||| || || || ||||||||||| || | |||||||| Sbjct 610484 TTCTTAGTTTCCTTATGAAGATTCGAAACCGCGATTCTGGCGGCAAGTACAGCATAATCG 610425 Query 64026 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 64085 ||||||| ||||| |||||| ||| |||| || || | | | || | ||||| || Sbjct 610424 GGATGTTTAGTAGTCATAGTGGCAGCTGTTTCTGCAGCTAAATTATCAAGCTCTACGGTG 610365 Query 64086 GTTACTCCA 64094 || || ||| Sbjct 610364 GTAACCCCA 610356 >seq7298 Length=1178 Score = 86.0 bits (94), Expect = 8e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 62097 TAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTG 62156 ||| | || || || ||||| ||||||| ||| || ||||| || ||||| ||||| ||| Sbjct 1019 TAATTTGGCTCAGCAATATGTATATTCAAAGACTGGCTTTGGTCAATGAATGCTCCTCTG 960 Query 62157 TCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGT 62203 ||| ||||||||| || || | || || ||||||||||| | ||| Sbjct 959 TCTACAGCCATTTCAATTATGTTTTTCTGAGGAATTTCCCATACAGT 913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622868038984560