Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ladona_20fulva_20[genbank_20GCA_5F000376725.1_202013-04-23] 10,166 sequences; 1,158,111,285 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq3837 143 2e-29 seq4793 104 2e-17 seq9746 100 2e-16 seq7337 91.5 1e-13 seq1460 86.0 4e-12 seq3560 84.2 1e-11 >seq3837 Length=2536911 Score = 143 bits (158), Expect = 2e-29 Identities = 206/285 (72%), Gaps = 8/285 (3%) Strand=Plus/Minus Query 6321 CCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAG 6380 || ||||| || || || || ||||| || || ||||| || |||||| |||||| || Sbjct 2313879 CCTACGAAGTACTTTGGATGTGAACTAGGTGCCCAGACACAATTTGATTTCAAAAATGAT 2313820 Query 6381 CGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTT 6440 || ||||| || || ||||| ||| | |||| ||||||||||| | ||||| |||||| Sbjct 2313819 CGTTTCATTGTCAATGGATCTCATGATGCTGCAAAGCTGCAGGATCTCCTTGATGGCTTT 2313760 Query 6441 ATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATTGTGTCT 6500 |||||| |||||||| || | ||||| || ||||| |||||| || || | Sbjct 2313759 ATTCGCCGCTTTGTGCTTTGCCCAGAATGTGACAACCCTGAGACCAGCCTCAT--AATTA 2313702 Query 6501 ACCAAGAGAAA--CACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGG--CAAGCT 6556 | ||| ||||| ||| ||| ||||| ||||| || || || |||||||| | | | Sbjct 2313701 ATCAAAAGAAAGGCACAATCAATCAGGCGTGCAAGGCTTGTGGGTACCATGGTCCCATC- 2313643 Query 6557 GGATTTATCACACAAACTCAACACCTTCATACTGAAGAATCCTCC 6601 | | | | | || || || ||||| ||||| ||||||| || || Sbjct 2313642 GAAATCAAC-CATAAGCTGAACACATTCATTTTGAAGAACCCACC 2313599 >seq4793 Length=478425 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| Sbjct 39280 CTCTCTCTTCAAAGTTCTTTTGAACTTTCCCTCACGGTACTTGTTCGCTATCCGTCTCGT 39339 Query 20007 GGTAATATTTAGCCTTA 20023 || ||||| | |||| Sbjct 39340 GGCCATATTCAATCTTA 39356 >seq9746 Length=293397 Score = 100 bits (110), Expect = 2e-16 Identities = 66/73 (90%), Gaps = 5/73 (7%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 32221 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 32280 Query 25957 TAATCCTTTCATG 25969 |||||| |||||| Sbjct 32281 TAATCCATTCATG 32293 >seq7337 Length=451322 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 38128 CCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATA 38187 |||| || |||||||| || || | || | || || || ||||| || || || | Sbjct 238499 CCTTCTGGATATTGTAGTCTGAGAGCGTGCGGCCATCTTCCAACTGTTTGCCAGCGAAAA 238440 Query 38188 TTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCT 38247 | | | ||| ||||| | ||| | |||||||||||| |||||| ||| ||||||| Sbjct 238439 TCAATCTTTGCTGATCAGGGGGAATTCCTTCTTTGTCCTGAATTTTGGCCTTTACATTCT 238380 Query 38248 GGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGA 38307 | |||||| ||| ||||| || || || || || || ||||| ||||| |||| Sbjct 238379 CAATAGTATCGGAGGCTTCGACTTCCAAAGTGATGGTCTTCCCAGTCAAAGTTTTAACGA 238320 Query 38308 ATATCTGCATGTT 38320 | |||||||| || Sbjct 238319 AGATCTGCATTTT 238307 >seq1460 Length=1689650 Score = 86.0 bits (94), Expect = 4e-12 Identities = 135/192 (70%), Gaps = 1/192 (1%) Strand=Plus/Plus Query 38128 CCTTT-TGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAAT 38186 ||||| || ||||||||||| || | | | | || || | ||| ||||| || || Sbjct 1136600 CCTTTCTGGATATTGTAATCTGAAAGAGTTCTCCCATCTTCAAGTTGCTTTCCAGCGAAA 1136659 Query 38187 ATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTC 38246 || || | ||| || || | || | |||||||| ||| |||||| ||||||||| Sbjct 1136660 ATAAGCCTTTGCTGGTCAGGTGGAATTCCTTCTTTATCCTGAATTTTAGCCTTCACATTT 1136719 Query 38247 TGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACG 38306 | | || || | ||||| || | || || ||||||||||| |||||||| ||| Sbjct 1136720 TCAATGGTGTCCGCTGGCTCAACCTCAAGGGTTATCGTTTTACCCGTTAAGGTTTTTACG 1136779 Query 38307 AATATCTGCATG 38318 || ||||||||| Sbjct 1136780 AAAATCTGCATG 1136791 >seq3560 Length=1522174 Score = 84.2 bits (92), Expect = 1e-11 Identities = 134/191 (70%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 38128 CCTTT-TGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAAT 38186 ||||| ||||| || |||||||| | ||| | || || | ||||| || |||||| Sbjct 967397 CCTTTCTGAATGTTATAATCAGAGAGTGTACGGCCATCTTCCAGCTGTTTGCCAGCAAAT 967338 Query 38187 ATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTC 38246 || | | ||||| || | || | ||||||||||||| |||||| ||| |||||| Sbjct 967337 ATCAATCTCTGTTGGTCTGGTGGAATGCCTTCTTTGTCCTGGATTTTTGCCTTAACATTC 967278 Query 38247 TGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACG 38306 | | ||| ||| || ||||| | ||| || || || || |||| || || ||| Sbjct 967277 TCAATAGTGTCTGATGGCTCCACTTCCAGTGTGATGGTCTTTCCAGTCAGTGTCTTAACG 967218 Query 38307 AATATCTGCAT 38317 ||||| ||||| Sbjct 967217 AATATTTGCAT 967207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334905700669946