Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ladona_20fulva_20[genbank_20GCA_5F000376725.1_202013-04-23] 10,166 sequences; 1,158,111,285 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq615 127 3e-24 seq2348 113 6e-20 seq7298 86.0 8e-12 >seq615 Length=2534639 Score = 127 bits (140), Expect = 3e-24 Identities = 94/110 (85%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 32696 AATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATAT 32755 ||| | ||||||||||||||| | || ||||| || || | |||||| ||||||||||| Sbjct 1866965 AATAAGTTCGTTGGAAAACGTCAAACCAGGCATAAGTCCTCTCTTTTTCAGCCAAAATAT 1867024 Query 32756 GGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAA 32805 || ||||||||||| ||||||||||||||||||||||| ||||| |||| Sbjct 1867025 TGAAGCAAATGATCCCGAAAAGAAAATTCCTTCTACTGCTGCAAATGCAA 1867074 Score = 109 bits (120), Expect = 7e-19 Identities = 128/173 (74%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 32922 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 32981 ||||| | || || || || | |||| |||||||||||||||| ||||| ||||| Sbjct 1867268 TCTTTGATGTAAGTGTCTATGAGAAGAGAGTACATTTCCGAATGAACATTTTCCATGGCT 1867327 Query 32982 ATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCT 33041 |||||||||||||| || || || || || | ||| || |||||| || |||||||| Sbjct 1867328 ATTTGAAATCCGTAAAAACACCTTGCTTCTGGAATTTGAACTTCTTGACTGAATCGTTCC 1867387 Query 33042 GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATG 33094 | | |||||| || || ||||| || || || ||||| || ||||| || Sbjct 1867388 ACCAGATTTTCGTTGACGATTCCATCCGATGCCGCGAAAAAAGCTAATACGTG 1867440 Score = 95.1 bits (104), Expect = 2e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 33147 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 33206 || || | ||| ||||||||||||||||||||||||||||| || || || ||||| ||| Sbjct 1867573 TTGGAAAGATCAACTTCTTCCACTGTCCAAAATGATGCCTCCGCTTTCTTGTACATCTTC 1867632 Query 33207 CAGATGTCATGATATTGAATTGGAAAAATAACAAA 33241 || || ||||| || ||||| || || || ||||| Sbjct 1867633 CAAATATCATGGTACTGAATCGGGAATATCACAAA 1867667 >seq2348 Length=1756034 Score = 113 bits (124), Expect = 6e-20 Identities = 162/226 (72%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 62980 TGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGG 63039 ||| |||||| |||||| || || |||||| || | || ||| |||| ||||| || Sbjct 612049 TGTGTACAATTTTTCGAATTCTTCACCCCAACAATCGAACAATCCTGGACTTTCATGGGG 611990 Query 63040 ACACATCAACGACCACTCTCCGTCATCCTTCA-CTCGTTTCATAAAGAGATCAGGAATCC 63098 ||||||||| ||| | || | | | |||| | |||||||| || | |||||||||| Sbjct 611989 ACACATCAAACTCCATACGCCATTA-CTTTCAACACGTTTCATGAACAAGTCAGGAATCC 611931 Query 63099 AAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGAT 63158 | || || || ||||| | || ||| |||||| |||||||||||||| || || | Sbjct 611930 ACAGGGCGTAGAAGAGATCACGGGCTCTCACTTCCTCTTTTCCTGTATTCTTCTTCAGGT 611871 Query 63159 CGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63204 | | || | | ||| |||| |||||| || || | || ||||| Sbjct 611870 CCAAAAATTCAAAAATGTCAGCATGCCATGGCTCAAGATAAATGGC 611825 Score = 109 bits (120), Expect = 7e-19 Identities = 99/125 (79%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 62792 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 62851 |||| | ||||||||| || |||||||| || ||||||||||| | ||||| |||||| Sbjct 614263 TATTCAACTATCTCAGTACACAGATTACTGCATTTGATGGTTCCAAGGTTTTGCTGATTA 614204 Query 62852 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 62911 ||| | || || ||||| || || || || |||||||| |||||||| ||||||||| Sbjct 614203 GATTTTCTATTGCAAGCATCTTTGTATAGCATAAATGGAGTTCCAGTTTCTATCTGAGAT 614144 Query 62912 TCTAT 62916 || || Sbjct 614143 TCAAT 614139 Score = 105 bits (116), Expect = 8e-18 Identities = 156/218 (72%), Gaps = 5/218 (2%) Strand=Plus/Minus Query 63221 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63280 |||||||| || ||||| | |||||| || || || ||||| || | || ||| || | | Sbjct 611583 TTGTTTCCACCTTGATCCACGTATCTTGCCGTATTGTTATATACCCGCAGCATAGGTACA 611524 Query 63281 ATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAAT--ATTAC 63338 || |||||||| ||||||||| || ||||||||||| ||| | | | || | | | Sbjct 611523 ATTCCATTGGAAACACCATTGGTGCCAGAGATATAGCTACCAGTAGATCTGATGCAATGC 611464 Query 63339 TAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTAT 63398 ||| ||||||||||| || || || || | | || ||| |||| ||||| | Sbjct 611463 ACATT--CAGACCTATTCCACCAGCTGACTTGGAAACCATCGCACATTGTTTCAACGTGT 611406 Query 63399 CATAGATGCCCTCTATACTATCATCCATCAT-GTTAAG 63435 |||| || || || || || || ||| |||| |||||| Sbjct 611405 CATATATACCATCAATGCTGTCTTCCTTCATCGTTAAG 611368 >seq7298 Length=1178 Score = 86.0 bits (94), Expect = 8e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 61952 TAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTG 62011 ||| | || || || ||||| ||||||| ||| || ||||| || ||||| ||||| ||| Sbjct 1019 TAATTTGGCTCAGCAATATGTATATTCAAAGACTGGCTTTGGTCAATGAATGCTCCTCTG 960 Query 62012 TCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGT 62058 ||| ||||||||| || || | || || ||||||||||| | ||| Sbjct 959 TCTACAGCCATTTCAATTATGTTTTTCTGAGGAATTTCCCATACAGT 913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633551481213600