Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ladona_20fulva_20[genbank_20GCA_5F000376725.1_202013-04-23] 10,166 sequences; 1,158,111,285 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq7337 116 3e-21 seq3560 109 5e-19 seq2348 91.5 1e-13 >seq7337 Length=451322 Score = 116 bits (128), Expect = 3e-21 Identities = 153/210 (73%), Gaps = 3/210 (1%) Strand=Plus/Plus Query 22199 AGTTTTATACATTT--GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGT 22256 ||| || ||| ||| | ||| ||||| || || ||||||||||| || || || || | Sbjct 238289 AGTATTTTACTTTTCAGGAAA-ATGCAGATCTTCGTTAAAACTTTGACTGGGAAGACCAT 238347 Query 22257 CACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAA 22316 |||| | ||||| ||| || ||||||| | || || | || |||||||| ||||| Sbjct 238348 CACTTTGGAAGTCGAAGCCTCCGATACTATTGAGAATGTAAAGGCCAAAATTCAGGACAA 238407 Query 22317 GGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCA 22376 || || ||||| || ||||| ||| | | || || || ||||||||||| || ||| Sbjct 238408 AGAAGGAATTCCCCCTGATCAGCAAAGATTGATTTTCGCTGGCAAACAGTTGGAAGATGG 238467 Query 22377 CCGCACCGTCTCCGATTACAACATTCAAAA 22406 |||||| |||| || ||||| || || || Sbjct 238468 CCGCACGCTCTCAGACTACAATATCCAGAA 238497 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||| | ||||| || || |||| || || || || | | Sbjct 240000 ATGCAGATCTTCGTGAAGACTCTTACCGGGAAGACCATCACCCTGGAGGTTGAGCCATCA 240059 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | ||| ||||| ||||| ||||||||||| ||||| || ||| Sbjct 240060 GACACAATTGAAAATGTAAAAGCCAAAATCCAAGATAAGGAGGGTATCCCACCTGACCAA 240119 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||| ||||| ||| | |||||| || ||| | ||||| || || Sbjct 240120 CAGAGACTCATCTTTGCTGGCAAGCAGCTTGAGGATGGACGTACCTTGTCCGACTATAAT 240179 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTT 22428 ||||| |||||||| || | ||| | ||| Sbjct 240180 ATTCAGAAAGAATCAACACTTCATCTTGTT 240209 >seq3560 Length=1522174 Score = 109 bits (120), Expect = 5e-19 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || | || || || || | ||||| ||||||||| | | Sbjct 967773 ATGCAAATCTTTGTCAAGACACTCACTGGAAAGACAATTACTCTGGAAGTGGAACCTTCA 967832 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || |||||| || |||||||| || |||||||| || || Sbjct 967833 GACACCATTGAGAATGTTAAGGCAAAAATCCAGGACAAGGAAGGCATTCCACCTGACCAG 967892 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||| || |||||| | |||||| ||| || |||| ||||||||| Sbjct 967893 CAGAGATTGATCTTTGCTGGTAAACAGCTGGAGGATGGCCGAACACTCTCAGATTACAAC 967952 Query 22399 ATTCAAAAAG 22408 || || |||| Sbjct 967953 ATCCAGAAAG 967962 Score = 109 bits (120), Expect = 5e-19 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || ||||| || | || || ||||| | |||||||||||||| | | Sbjct 970990 ATGCAGATCTTCGTTAAGACACTTACAGGGAAAACTATAACTCTTGAAGTGGAGCCGTCA 971049 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | || || || ||||||||||| ||||||||||| || ||| Sbjct 971050 GACACTATTGAGAACGTGAAGGCCAAGATCCAAGACAAGGAAGGTATTCCACCTGACCAA 971109 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||| || || ||| | || ||| ||| ||| |||| ||||||||| Sbjct 971110 CAGAGGTTGATCTTTGCAGGAAAGCAGCTTGAAGATGGCCGAACCCTCTCTGATTACAAC 971169 Query 22399 ATTCAAAAAG 22408 |||||||||| Sbjct 971170 ATTCAAAAAG 971179 Score = 105 bits (116), Expect = 6e-18 Identities = 137/188 (73%), Gaps = 1/188 (1%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || |||||| | || || ||||| | || |||||||||||| | | Sbjct 972962 ATGCAGATCTTCGTCAAAACTCTTACGGGAAAAACTATTACCCTTGAAGTGGAACCATCA 973021 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | || || | | ||||||||||| || |||||||| || || Sbjct 973022 GATACGATTGAGAATGTTAAGGCAAGA-TCCAAGACAAGGAAGGCATTCCACCTGACCAG 973080 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||| || |||||| | |||||| ||| || |||| ||||||||| Sbjct 973081 CAGAGATTGATCTTTGCTGGTAAACAGCTGGAGGATGGCCGAACACTCTCAGATTACAAC 973140 Query 22399 ATTCAAAA 22406 ||||| || Sbjct 973141 ATTCAGAA 973148 Score = 100 bits (110), Expect = 2e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || || | || || ||||| | ||||||||||||||| | | Sbjct 971294 ATGCAAATTTTCGTCAAGACACTTACAGGGAAAACTATAACTCTTGAAGTGGAACCGTCA 971353 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | || || || || || || ||||| ||||| || || || Sbjct 971354 GACACTATTGAGAACGTGAAGGCCAAGATCCAGGATAAAGAGGGCATTCCTCCTGACCAG 971413 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||| || || ||||| |||||| || ||| |||| ||||||||| Sbjct 971414 CAGAGATTGATCTTTGCAGGAAAGCAGTTGGAGGATGGTCGTACCCTCTCTGATTACAAC 971473 Query 22399 ATTCAAAAAG 22408 |||||||||| Sbjct 971474 ATTCAAAAAG 971483 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || || || | || || || || | || || ||||| || | | Sbjct 965388 GATGCAGATCTTCGTCAAGACCCTTACAGGGAAGACTATTACCCTCGAAGTTGAGCCTTC 965447 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||||| | || || | || ||||||||||| |||||||| || || ||||| || Sbjct 965448 TGATACAATTGAAAATGTGAAGGCTAAAATTCAAGATAAGGAGGGAATCCCGCCCGACCA 965507 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 ||| | || || ||||| || || || ||||| ||| |||||| | || || ||||| Sbjct 965508 ACAGAGACTGATTTTTGCTGGAAAGCAATTAGAAGATGGCCGCACACTTTCAGACTACAA 965567 Query 22398 CATTCAAAAAG 22408 ||||||||||| Sbjct 965568 CATTCAAAAAG 965578 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || |||||| | || || ||||| | || |||||||||||| | | Sbjct 965990 ATGCAGATCTTCGTCAAAACTCTTACGGGAAAAACTATTACCCTTGAAGTGGAACCATCA 966049 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | || ||| || || |||||||| || |||||||| || || Sbjct 966050 GACACTATTGAAAACGTTAAGGCAAAGATCCAGGACAAGGAAGGCATTCCACCTGACCAG 966109 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||| || |||||| | |||||| | | || | || ||||| ||| Sbjct 966110 CAGAGATTGATCTTTGCTGGTAAACAGCTGGAGGATGGCAGAACTCTTTCTGATTATAAC 966169 Query 22399 ATTCAAAA 22406 || ||||| Sbjct 966170 ATCCAAAA 966177 >seq2348 Length=1756034 Score = 91.5 bits (100), Expect = 1e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 129978 TTCACGCGGACACATCAAACTCCACATTCCATCCGCTTCGACTCGTTTCATAAACAAATC 130037 |||| | ||||||||||||||||| | |||| ||| || |||||||| ||||| || Sbjct 611998 TTCATGGGGACACATCAAACTCCATACGCCATTACTTTCAACACGTTTCATGAACAAGTC 611939 Query 130038 GGGTACCCACAGGGCGTACAACAAATCTCGCGCTTTTCTATCCTCGGCACCCATGTTACG 130097 || | |||||||||||| || | ||| || ||| | ||||| || | || Sbjct 611938 AGGAATCCACAGGGCGTAGAAGAGATCACGGGCTCTCACTTCCTCTTTTCCTGTATTCTT 611879 Query 130098 TTTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACATAAATTGCCATTGC 130157 ||||| || | || || ||||||| || ||||| || |||| |||||| || | ||| Sbjct 611878 CTTCAGGTCCAAAAATTCAAAAATGTCAGCATGCCATGGCTCAAGATAAATGGCAAATGC 611819 Query 130158 GCC 130160 || Sbjct 611818 ACC 611816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419675996487790