Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ladona_20fulva_20[genbank_20GCA_5F000376725.1_202013-04-23] 10,166 sequences; 1,158,111,285 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq7337 96.9 2e-15 seq3560 95.1 9e-15 seq1460 86.0 4e-12 >seq7337 Length=451322 Score = 96.9 bits (106), Expect = 2e-15 Identities = 121/165 (73%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 15022 TCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTG 15081 ||||| || |||||||||||| | ||||| | || || || ||||||||||| ||| Sbjct 238464 TCTTCCAACTGTTTGCCAGCGAAAATCAATCTTTGCTGATCAGGGGGAATTCCTTCTTTG 238405 Query 15082 TCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATG 15141 || ||||||| |||||| | || ||||||||| ||| || || || || ||| Sbjct 238404 TCCTGAATTTTGGCCTTTACATTCTCAATAGTATCGGAGGCTTCGACTTCCAAAGTGATG 238345 Query 15142 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT--TGAAA 15184 || || || |||| |||||| || || || ||||| || ||||| Sbjct 238344 GTCTTCCCAGTCAAAGTTTTAACGAAGATCTGCATTTTCCTGAAA 238300 >seq3560 Length=1522174 Score = 95.1 bits (104), Expect = 9e-15 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 14987 CTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATA 15046 ||||||| ||||| ||||| || |||| | ||||| | |||||||||||| | | Sbjct 965874 CTTTTTGGATGTTATAATCTGAAAGGGTTCTGCCATCTTCCAGCTGTTTGCCAGCGAAGA 965815 Query 15047 TCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTT 15106 |||| | |||||||||| ||||| |||||||| || || ||| || || | | Sbjct 965814 TCAATCTCTGTTGGTCGGGAGGAATGCCTTCCTTATCTTGGATCTTGGCCTTGACGTTCT 965755 Query 15107 CTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAA 15166 | || || || ||| || || || || || ||||| || |||||||| || |||| Sbjct 965754 CAATGGTGTCTGACGGTTCCACTTCCAAAGTGATAGTTTTTCCAGTCAGAGTCTTAACAA 965695 Query 15167 AAATTTGCAT 15176 | |||||||| Sbjct 965694 ATATTTGCAT 965685 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 14989 TTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATC 15048 ||||| ||||| ||||| ||| |||| | || || | ||||| ||||| | ||| Sbjct 966177 TTTTGGATGTTATAATCAGAAAGAGTTCTGCCATCCTCCAGCTGTTTACCAGCAAAGATC 966118 Query 15049 AAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTC 15107 || | ||| ||||| |||||| ||||||||||| || ||||| || || |||| Sbjct 966117 AATCTCTGCTGGTCAGGTGGAATGCCTTCCTTGTCCTGGATCTTTGC-CTTAACGTTTTC 966059 Query 15108 TATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAA 15167 ||||| || ||| || || | |||||| ||||| || || |||||||| || || Sbjct 966058 AATAGTGTCTGATGGTTCCACTTCAAGGGTAATAGTTTTTCCCGTAAGAGTTTTGACGAA 965999 Query 15168 AATTTGCAT 15176 || ||||| Sbjct 965998 GATCTGCAT 965990 Score = 86.0 bits (94), Expect = 4e-12 Identities = 135/190 (71%), Gaps = 5/190 (3%) Strand=Plus/Minus Query 14989 TTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATA 15046 || || ||||||||||| ||||| | ||| | || || | ||||| ||||| | | Sbjct 973148 TTCTGAATGTTGTAATC--TGAGAGTGTTCGGCCATCCTCCAGCTGTTTACCAGCAAAGA 973091 Query 15047 TCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTT 15106 |||| | ||| ||||| |||||| ||||||||||| || |||| || ||| | | Sbjct 973090 TCAATCTCTGCTGGTCAGGTGGAATGCCTTCCTTGTCTTGGATCTTGC-CTTAACATTCT 973032 Query 15107 CTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAA 15166 | || ||||| ||| || || | |||||| ||||| || || |||||||| || | Sbjct 973031 CAATCGTATCTGATGGTTCCACTTCAAGGGTAATAGTTTTTCCCGTAAGAGTTTTGACGA 972972 Query 15167 AAATTTGCAT 15176 | || ||||| Sbjct 972971 AGATCTGCAT 972962 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/192 (70%), Gaps = 4/192 (2%) Strand=Plus/Minus Query 14987 CTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTA 15044 ||||||| |||||||| || ||| | | || | ||||||||||| || ||||| | Sbjct 965578 CTTTTTGAATGTTGTAGTC--TGAAAGTGTGCGGCCATCTTCTAATTGCTTTCCAGCAAA 965521 Query 15045 TATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAAT 15104 |||| | |||||||||| || ||||| ||||| || |||||| || ||| | Sbjct 965520 AATCAGTCTCTGTTGGTCGGGCGGGATTCCCTCCTTATCTTGAATTTTAGCCTTCACATT 965461 Query 15105 TTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTAC 15164 ||| || ||||| | || || || | |||||| || || ||||| || || || || Sbjct 965460 TTCAATTGTATCAGAAGGCTCAACTTCGAGGGTAATAGTCTTCCCTGTAAGGGTCTTGAC 965401 Query 15165 AAAAATTTGCAT 15176 || || ||||| Sbjct 965400 GAAGATCTGCAT 965389 >seq1460 Length=1689650 Score = 86.0 bits (94), Expect = 4e-12 Identities = 135/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 14987 CTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATA 15046 |||| || || |||||||| ||| ||||| | ||||| | ||| || |||||| | | Sbjct 1136601 CTTTCTGGATATTGTAATCTGAAAGAGTTCTCCCATCTTCAAGTTGCTTTCCAGCGAAAA 1136660 Query 15047 TCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTT 15106 | | | || ||||| |||||||||||| || || |||||| || ||| ||| Sbjct 1136661 TAAGCCTTTGCTGGTCAGGTGGAATTCCTTCTTTATCCTGAATTTTAGCCTTCACATTTT 1136720 Query 15107 CTATAGTAT-CGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACA 15165 | || || | |||| || || || | ||| || |||||||| || | |||||||| Sbjct 1136721 CAATGGTGTCCGCT-GGCTCAACCTCAAGGGTTATCGTTTTACCCGTTAAGGTTTTTACG 1136779 Query 15166 AAAATTTGCAT 15176 ||||| ||||| Sbjct 1136780 AAAATCTGCAT 1136790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357347719801310