Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ladona_20fulva_20[genbank_20GCA_5F000376725.1_202013-04-23] 10,166 sequences; 1,158,111,285 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq3560 109 5e-19 seq1460 98.7 9e-16 >seq3560 Length=1522174 Score = 109 bits (120), Expect = 5e-19 Identities = 139/189 (74%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 45153 TTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATC 45212 |||||||| |||||||| | |||| | ||| |||| ||||| || ||| | ||| Sbjct 965872 TTTTGGATGTTATAATCTGAAAGGGTTCTGCCATCTTCCAGCTGTTTGCCAGCGAAGATC 965813 Query 45213 AATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TC 45271 |||| || ||||| || ||||||||||| |||||||| || || |||| || | || Sbjct 965812 AATCTCTGTTGGTCGGGAGGAATGCCTTCCTTATCTTGGATCTTGGCCTTGA-CGTTCTC 965754 Query 45272 TACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAA 45331 | |||||| || | || ||||| | ||| | ||||| || || ||||| || ||||| Sbjct 965753 AATGGTGTCTGACGGTTCCACTTCCAAAGTGATAGTTTTTCCAGTCAGAGTCTTAACAAA 965694 Query 45332 AATTTGCAT 45340 |||||||| Sbjct 965693 TATTTGCAT 965685 Score = 96.9 bits (106), Expect = 3e-15 Identities = 141/196 (72%), Gaps = 5/196 (3%) Strand=Plus/Minus Query 45148 ATTCCTTT-TGGATATTATAATCGCTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTG 45204 || ||||| ||||| || ||||| ||| || || | ||| |||| ||||| || | Sbjct 967966 ATACCTTTCTGGATGTTGTAATC--TGAGAGTGTTCGGCCATCCTCCAGCTGTTTACCAG 967909 Query 45205 CGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGA 45264 | | ||||||| |||||||| || ||||||||||| || || || |||||| || | Sbjct 967908 CAAAGATCAATCTCTGCTGGTCAGGTGGAATGCCTTCCTTGTCCTGGATTTTTGCCTTAA 967849 Query 45265 TCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTT 45324 || | |||||| |||| || ||||| ||||||| || || || || || || | Sbjct 967848 CATTCTCAATGGTGTCTGAAGGTTCCACTTCCAGAGTAATTGTCTTTCCAGTGAGTGTCT 967789 Query 45325 TTACAAAAATTTGCAT 45340 | ||||| |||||||| Sbjct 967788 TGACAAAGATTTGCAT 967773 Score = 95.1 bits (104), Expect = 1e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 45151 CCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATA 45210 |||||||||| |||||||| | ||| | ||| |||| ||||| || || | | Sbjct 966179 CCTTTTGGATGTTATAATCAGAAAGAGTTCTGCCATCCTCCAGCTGTTTACCAGCAAAGA 966120 Query 45211 TCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTT 45270 |||||| |||||||| || ||||||||||| || || || || ||| || | || Sbjct 966119 TCAATCTCTGCTGGTCAGGTGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTAACGTTTT 966060 Query 45271 CTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAA 45330 | | ||||| || | || ||||| || |||| ||||| || || |||||||| || | Sbjct 966059 CAATAGTGTCTGATGGTTCCACTTCAAGGGTAATAGTTTTTCCCGTAAGAGTTTTGACGA 966000 Query 45331 AAATTTGCAT 45340 | || ||||| Sbjct 965999 AGATCTGCAT 965990 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 45153 TTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATC 45212 ||||| || || ||||| || ||| | ||| ||||| || |||||||| | ||| Sbjct 971481 TTTTGAATGTTGTAATCAGAGAGGGTACGACCATCCTCCAACTGCTTTCCTGCAAAGATC 971422 Query 45213 AATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TC 45271 |||| |||||||| || |||||||| |||||||| || || || || | || | || Sbjct 971421 AATCTCTGCTGGTCAGGAGGAATGCCCTCTTTATCCTGGATCTTGGCCTTCA-CGTTCTC 971363 Query 45272 TACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAA 45331 | ||||| || | || ||||| ||||| | ||||| || || || || || || || Sbjct 971362 AATAGTGTCTGACGGTTCCACTTCAAGAGTTATAGTTTTCCCTGTAAGTGTCTTGACGAA 971303 Query 45332 AATTTGCAT 45340 ||||||||| Sbjct 971302 AATTTGCAT 971294 >seq1460 Length=1689650 Score = 98.7 bits (108), Expect = 9e-16 Identities = 139/194 (72%), Gaps = 1/194 (1%) Strand=Plus/Plus Query 45148 ATTCCTTT-TGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCG 45206 || ||||| |||||||| ||||| | ||| | ||| || | ||| ||||| ||| Sbjct 1136597 ATACCTTTCTGGATATTGTAATCTGAAAGAGTTCTCCCATCTTCAAGTTGCTTTCCAGCG 1136656 Query 45207 TATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATC 45266 | || | | ||||||||| || ||||| ||||||||||| |||||||| || | Sbjct 1136657 AAAATAAGCCTTTGCTGGTCAGGTGGAATTCCTTCTTTATCCTGAATTTTAGCCTTCACA 1136716 Query 45267 GCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTT 45326 ||| | |||||| | | ||| || || || || | |||||| || |||| |||||| Sbjct 1136717 TTTTCAATGGTGTCCGCTGGCTCAACCTCAAGGGTTATCGTTTTACCCGTTAAGGTTTTT 1136776 Query 45327 ACAAAAATTTGCAT 45340 || ||||| ||||| Sbjct 1136777 ACGAAAATCTGCAT 1136790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451945761693360