Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ladona_20fulva_20[genbank_20GCA_5F000376725.1_202013-04-23] 10,166 sequences; 1,158,111,285 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq615 158 1e-33 seq2348 105 8e-18 >seq615 Length=2534639 Score = 158 bits (174), Expect = 1e-33 Identities = 158/205 (77%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 19002 TTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGC 19061 ||| || ||||| || ||||||||||| |||||||| ||||| | ||| ||||| ||||| Sbjct 1866971 TTCGTTGGAAAACGTCAAACCAGGCATAAGTCCTCTCTTTTTCAGCCAAAATATTGAAGC 1867030 Query 19062 AAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATA 19121 ||||||||| |||||||| || ||||||||||||||||| ||||| | | ||| || | Sbjct 1867031 AAATGATCCCGAAAAGAAAATTCCTTCTACTGCTGCAAATGCAACCACACGTTCACCGAA 1867090 Query 19122 ACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGG 19181 ||| ||| || | | |||||| | || |||||| |||||||||| ||||| || Sbjct 1867091 ACTTGCAGTATCACTTGCAATCCACTGCAATGCCCACGTAGCCTTCTTTCGAACACACGG 1867150 Query 19182 CATTGTCTCTATAGAATTAAATAGA 19206 | || || || | ||| |||||| Sbjct 1867151 TAAGGTTTCAATGGCATTGAATAGA 1867175 Score = 125 bits (138), Expect = 8e-24 Identities = 114/144 (79%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 19254 GTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTC 19313 ||||||||| ||||||| |||||| || || || ||||||||||||||||| |||||||| Sbjct 1867297 GTACATTTCCGAATGAACATTTTCCATGGCTATTTGAAATCCGTAAAAACACCTTGCTTC 1867356 Query 19314 TGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACT 19373 || || || ||||| || |||| ||| |||| |||||| || || |||||||| Sbjct 1867357 TGGAATTTGAACTTCTTGACTGAATCGTTCCACCAGATTTTCGTTGACGATTCCATCCGA 1867416 Query 19374 AGCTGCAAAAAATGCTAATACATG 19397 || || ||||| |||||||| || Sbjct 1867417 TGCCGCGAAAAAAGCTAATACGTG 1867440 Score = 89.7 bits (98), Expect = 6e-13 Identities = 86/110 (78%), Gaps = 4/110 (4%) Strand=Plus/Plus Query 19439 CATTAATATCTT----TAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCT 19494 ||||||||| || | || | ||| |||||||| ||||||||||| || ||||| ||| Sbjct 1867558 CATTAATATTTTACCTTGGAAAGATCAACTTCTTCCACTGTCCAAAATGATGCCTCCGCT 1867617 Query 19495 TTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544 || || ||||| ||||| |||||| | || || || || ||||| ||||| Sbjct 1867618 TTCTTGTACATCTTCCAAATATCATGGTACTGAATCGGGAATATCACAAA 1867667 >seq2348 Length=1756034 Score = 105 bits (116), Expect = 8e-18 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 47906 TACCTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGT 47965 |||||||| |||| | |||| | ||| |||| ||| ||||||| |||||||| || Sbjct 614282 TACCTCATCTGGAGAGCTGTATTCAACTATCTCAGTACACAGATTACTGCATTTGATGGT 614223 Query 47966 ACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGT 48025 || | ||||| |||||| | || || || || ||||| |||||||| || || Sbjct 614222 TCCAAGGTTTTGCTGATTAGATTTTCTATTGCAAGCATCTTTGTATAGCATAAATGGAGT 614163 Query 48026 TCCAGTTTCTATCTGAGATTCAAT 48049 |||||||||||||||||||||||| Sbjct 614162 TCCAGTTTCTATCTGAGATTCAAT 614139 Score = 96.9 bits (106), Expect = 4e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 48354 TTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACA 48413 || || || |||||||| | ||||| || ||||||||||| || | | ||| || ||| Sbjct 611583 TTGTTTCCACCTTGATCCACGTATCTTGCCGTATTGTTATATACCCGCAGCATAGGTACA 611524 Query 48414 ATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTAT--ATTAC 48471 || ||||| || | ||||||||| || || ||||| || ||| ||| ||| || | | | Sbjct 611523 ATTCCATTGGAAACACCATTGGTGCCAGAGATATAGCTACCAGTAGATCTGATGCAATGC 611464 Query 48472 TAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTAT 48531 ||| | |||||| ||||| || || || | | ||||| |||| | || | Sbjct 611463 ACATT--CAGACCTATTCCACCAGCTGACTTGGAAACCATCGCACATTGTTTCAACGTGT 611406 Query 48532 CATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACT 48580 |||| || || || || || || || |||| |||| || || ||||| Sbjct 611405 CATATATACCATCAATGCTGTCTTCCTTCATCGTTAAGAGGAAGCAACT 611357 Score = 82.4 bits (90), Expect = 9e-11 Identities = 149/217 (69%), Gaps = 1/217 (0%) Strand=Plus/Minus Query 48579 CTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAAC 48638 || || | ||| |||||| ||| | | ||| || | |||||||| |||||| |||| Sbjct 611236 CTTGAAAGTTGAGGATGAGGAGTAGCAGCATTGAAAAGCGTTGGAGAGGCATGAGTAAAG 611177 Query 48639 CATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATA 48698 | ||| ||||| | |||||||||||||| | | || | |||| ||| || Sbjct 611176 AAACGCTCAGATAAGAGATTATATGTTTCAATGGCTGCCTCCACATCCTCCCCATGGATC 611117 Query 48699 CCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTC 48758 || | || ||||||||| ||||||| |||||||| || | | ||| || ||| ||| Sbjct 611116 CCCACAGCTACACGCATCAACATATGCTGAGGTCTCTCTGCTACTTTACCATCTATCTTC 611057 Query 48759 AAAAGATATGATTTTTCCAATGT-TTTAAAACCAAAA 48794 | | ||| ||| |||| || | |||| ||||| Sbjct 611056 AGTAAATAGGATCGCTCCAGGGTCTACAAAAACAAAA 611020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562037370024240