Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ladona_20fulva_20[genbank_20GCA_5F000376725.1_202013-04-23] 10,166 sequences; 1,158,111,285 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq7337 123 4e-23 seq3560 116 7e-21 seq1460 113 8e-20 >seq7337 Length=451322 Score = 123 bits (136), Expect = 4e-23 Identities = 150/204 (74%), Gaps = 4/204 (2%) Strand=Plus/Minus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 ||||| ||||| || | ||| | ||| || || ||||| || || ||||| ||||| Sbjct 238491 ATATTGTAGTCTGAGAGCGTGCGGCCATCTTCCAACTGTTTGCCAGCGAAAATCAATCTT 238432 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 || |||||||| || ||||||||||| || || ||||||| |||| ||| ||||||| Sbjct 238431 TGCTGATCAGGGGGAATTCCTTCTTTGTCCTGAATTTTGGCCTTTACATTCTCAATAGTA 238372 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 ||||| | || ||||| | ||| || || || || || | ||||| || || || ||| Sbjct 238371 TCGGAGGCTTCGACTTCCAAAGTGATGGTCTTCCCAGTCAAAGTTTTAACGAAGATCTGC 238312 Query 193359 ATTTT----ATTAGTAAAATAATT 193378 ||||| | ||||||||| || Sbjct 238311 ATTTTCCTGAAAAGTAAAATACTT 238288 Score = 123 bits (136), Expect = 4e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 193148 AAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATC 193207 ||| || ||||| | ||| | ||||| ||||||||||||||| || || | ||| Sbjct 240212 AAGAACAAGATGAAGTGTTGATTCTTTCTGAATATTATAGTCGGACAAGGTACGTCCATC 240153 Query 193208 GTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 193267 || | || || || ||||| || | ||||||||| ||||| || || || || ||||| Sbjct 240152 CTCAAGCTGCTTGCCAGCAAAGATGAGTCTCTGTTGGTCAGGTGGGATACCCTCCTTATC 240093 Query 193268 TTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGT 193327 ||| ||||||| ||||| |||| ||| || || || | |||||| || || || || || Sbjct 240092 TTGGATTTTGGCTTTTACATTTTCAATTGTGTCTGATGGCTCAACCTCCAGGGTGATGGT 240033 Query 193328 TTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || || || ||||| Sbjct 240032 CTTCCCGGTAAGAGTCTTCACGAAGATCTGCAT 240000 >seq3560 Length=1522174 Score = 116 bits (128), Expect = 7e-21 Identities = 120/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || || || ||||| ||||| || |||||||| || |||||||| || || ||||| Sbjct 971449 ATCCTCCAACTGCTTTCCTGCAAAGATCAATCTCTGCTGGTCAGGAGGAATGCCCTCTTT 971390 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||| || || |||| || | || |||||| || || | || ||||| |||||||| Sbjct 971389 ATCCTGGATCTTGGCCTTCACGTTCTCAATAGTGTCTGACGGTTCCACTTCAAGAGTTAT 971330 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 |||||| ||||| || || || || || ||||||||| Sbjct 971329 AGTTTTCCCTGTAAGTGTCTTGACGAAAATTTGCATT 971293 Score = 109 bits (120), Expect = 1e-18 Identities = 134/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || ||||| || || | ||||| ||| || | ||||| || || || || |||||| Sbjct 965866 ATGTTATAATCTGAAAGGGTTCTGCCATCTTCCAGCTGTTTGCCAGCGAAGATCAATCTC 965807 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 ||||| || ||||| || ||||| |||||||| || |||| || | || ||| || Sbjct 965806 TGTTGGTCGGGAGGAATGCCTTCCTTATCTTGGATCTTGGCCTTGACGTTCTCAATGGTG 965747 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || || | || ||||| | ||| |||||||| || || || || || |||||||||||| Sbjct 965746 TCTGACGGTTCCACTTCCAAAGTGATAGTTTTTCCAGTCAGAGTCTTAACAAATATTTGC 965687 Query 193359 ATT 193361 ||| Sbjct 965686 ATT 965684 Score = 107 bits (118), Expect = 3e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || ||||| ||||| || || |||||||| ||||| || || ||||| || ||||| || Sbjct 971135 TGCTTTCCTGCAAAGATCAACCTCTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGGATC 971076 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| || | || |||||| || || | ||| ||||| |||||||||||||| ||| Sbjct 971075 TTGGCCTTCACGTTCTCAATAGTGTCTGACGGCTCCACTTCAAGAGTTATAGTTTTCCCT 971016 Query 193335 GTTAGCGTTTTTACAAATATTTGCATT 193361 || || || || || || || |||||| Sbjct 971015 GTAAGTGTCTTAACGAAGATCTGCATT 970989 Score = 96.9 bits (106), Expect = 6e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 ||||| || ||||| || ||||||||||| || || || || |||||||| || || ||| Sbjct 967352 TGTTTGCCAGCAAATATCAATCTCTGTTGGTCTGGTGGAATGCCTTCTTTGTCCTGGATT 967293 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 || | || | ||| |||||| || || | ||| ||||| || || || || || || Sbjct 967292 TTTGCCTTAACATTCTCAATAGTGTCTGATGGCTCCACTTCCAGTGTGATGGTCTTTCCA 967233 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || ||||||||||| Sbjct 967232 GTCAGTGTCTTAACGAATATTTGCAT 967207 >seq1460 Length=1689650 Score = 113 bits (124), Expect = 8e-20 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 ||||| || || || | ||||| ||| || | ||| ||||| || ||||| | || Sbjct 1136609 ATATTGTAATCTGAAAGAGTTCTCCCATCTTCAAGTTGCTTTCCAGCGAAAATAAGCCTT 1136668 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 || || ||||| || |||||||||||||| || ||||| | || | |||| ||| || Sbjct 1136669 TGCTGGTCAGGTGGAATTCCTTCTTTATCCTGAATTTTAGCCTTCACATTTTCAATGGTG 1136728 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || | | |||||| || || ||||| |||||||| |||| |||||||| || || ||| Sbjct 1136729 TCCGCTGGCTCAACCTCAAGGGTTATCGTTTTACCCGTTAAGGTTTTTACGAAAATCTGC 1136788 Query 193359 AT 193360 || Sbjct 1136789 AT 1136790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899540076417120