Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ladona_20fulva_20[genbank_20GCA_5F000376725.1_202013-04-23] 10,166 sequences; 1,158,111,285 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq3560 140 5e-28 seq7337 113 7e-20 seq1460 86.0 9e-12 >seq3560 Length=1522174 Score = 140 bits (154), Expect = 5e-28 Identities = 148/194 (76%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||||||| |||| || |||||||||||||||| || || ||||| ||| || Sbjct 965684 AATGCAAATATTTGTTAAGACTCTGACTGGAAAAACTATCACTTTGGAAGTGGAACCGTC 965743 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| ||||| || || || |||||||| |||||||| ||||| || || Sbjct 965744 AGACACCATTGAGAACGTCAAGGCCAAGATCCAAGATAAGGAAGGCATTCCTCCCGACCA 965803 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||| |||||||| | || || || ||||| |||||| |||||| | |||||||||| Sbjct 965804 ACAGAGATTGATCTTCGCTGGCAAACAGCTGGAAGATGGCAGAACCCTTTCAGATTATA- 965862 Query 156002 TATATCCAAAGAGG 156015 | ||||||| ||| Sbjct 965863 -ACATCCAAAAAGG 965875 Score = 113 bits (124), Expect = 7e-20 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||||||||| |||| ||| |||||||||| || || ||| | ||||| || || Sbjct 967207 ATGCAAATATTCGTTAAGACACTGACTGGAAAGACCATCACACTGGAAGTGGAGCCATCA 967266 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| || || || ||||| || || ||||||||||| || ||||| ||| Sbjct 967267 GACACTATTGAGAATGTTAAGGCAAAAATCCAGGACAAAGAAGGCATTCCACCAGACCAA 967326 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || |||||||| | ||| || || ||||| |||||| | | || | || |||||||| Sbjct 967327 CAGAGATTGATATTTGCTGGCAAACAGCTGGAAGATGGCCGTACACTCTCTGATTATAAC 967386 Query 156003 AT 156004 || Sbjct 967387 AT 967388 Score = 111 bits (122), Expect = 2e-19 Identities = 157/219 (72%), Gaps = 5/219 (2%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || || | ||||| | || |||||||||||||| | ||||| ||| || Sbjct 965989 AATGCAGATCTTCGTCAAAACTCTTACGGGAAAAACTATTACCCTTGAAGTGGAACCATC 966048 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | |||| |||||| || || || || || || |||||||| || || || || Sbjct 966049 AGACACTATTGAAAACGTTAAGGCAAAGATCCAGGACAAGGAAGGCATTCCACCTGACCA 966108 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || |||||||| | ||| ||||| ||||| || ||| ||||||| | || ||||||| Sbjct 966109 GCAGAGATTGATCTTTGCTGGTAAACAGCTGGAGGATGGCAGAACTCTTTCTGATTATA- 966167 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATT 156040 | ||||||| || || | | |||| ||| ||||| Sbjct 966168 -ACATCCAAAAGGGTGAGGAT---TTTACAGTTTAGATT 966202 Score = 93.3 bits (102), Expect = 6e-14 Identities = 131/183 (72%), Gaps = 1/183 (1%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || || | ||||| | || |||||||||||||| | ||||| ||| || Sbjct 972961 AATGCAGATCTTCGTCAAAACTCTTACGGGAAAAACTATTACCCTTGAAGTGGAACCATC 973020 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| ||| || || || || || ||||| || |||||||| || || || || Sbjct 973021 AGATACGATTGAGAATGT-TAAGGCAAGATCCAAGACAAGGAAGGCATTCCACCTGACCA 973079 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || |||||||| | ||| ||||| ||||| || ||| | |||| | |||||||| || Sbjct 973080 GCAGAGATTGATCTTTGCTGGTAAACAGCTGGAGGATGGCCGAACACTCTCAGATTACAA 973139 Query 156002 TAT 156004 || Sbjct 973140 CAT 973142 >seq7337 Length=451322 Score = 113 bits (124), Expect = 7e-20 Identities = 136/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 |||||||| || || ||||||| |||||||| || || || || || |||||||||| Sbjct 238307 AAAATGCAGATCTTCGTTAAAACTTTGACTGGGAAGACCATCACTTTGGAAGTCGAAGCC 238366 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || |||| |||| || || || ||||| || || |||||||| || || || || Sbjct 238367 TCCGATACTATTGAGAATGTAAAGGCCAAAATTCAGGACAAAGAAGGAATTCCCCCTGAT 238426 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 || ||||||||||||| || || || ||| | |||||| | | || | ||||| || Sbjct 238427 CAGCAAAGATTGATTTTCGCTGGCAAACAGTTGGAAGATGGCCGCACGCTCTCAGACTAC 238486 Query 156000 AATAT 156004 ||||| Sbjct 238487 AATAT 238491 >seq1460 Length=1689650 Score = 86.0 bits (94), Expect = 9e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | ||||| || || || ||||| || || | || || || | Sbjct 1136790 ATGCAGATTTTCGTAAAAACCTTAACGGGTAAAACGATAACCCTTGAGGTTGAGCCAGCG 1136731 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||| ||||| |||||| || ||||||||||| || || || || || Sbjct 1136730 GACACCATTGAAAATGTGAAGGCTAAAATTCAGGATAAAGAAGGAATTCCACCTGACCAG 1136671 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||| | |||| || || ||||| || |||||| |||||| | |||||||| ||| Sbjct 1136670 CAAAGGCTTATTTTCGCTGGAAAGCAACTTGAAGATGGGAGAACTCTTTCAGATTACAAT 1136611 Query 156003 AT 156004 || Sbjct 1136610 AT 1136609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731778997365600