Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ladona_20fulva_20[genbank_20GCA_5F000376725.1_202013-04-23] 10,166 sequences; 1,158,111,285 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq7337 132 9e-26 seq3560 127 4e-24 seq1460 96.9 7e-15 seq615 96.9 7e-15 >seq7337 Length=451322 Score = 132 bits (146), Expect = 9e-26 Identities = 141/186 (76%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 |||||| || || || | || || |||| ||||| ||||| ||||| || || ||||| Sbjct 238492 GATATTGTAGTCTGAGAGCGTGCGGCCATCTTCCAACTGTTTGCCAGCGAAAATCAATCT 238433 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 || |||||||| || ||||||||||| || || ||||| |||||||| |||| Sbjct 238432 TTGCTGATCAGGGGGAATTCCTTCTTTGTCCTGAATTTTGGCCTTTACATTCTCAATAGT 238373 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 ||| || | ||| ||||| | ||| ||||| || ||||| || ||||||| || ||||| Sbjct 238372 ATCGGAGGCTTCGACTTCCAAAGTGATGGTCTTCCCAGTCAAAGTTTTAACGAAGATCTG 238313 Query 192534 CATTTT 192539 |||||| Sbjct 238312 CATTTT 238307 Score = 107 bits (118), Expect = 4e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 |||||||| || || || || ||| |||| || | || || ||||||||||| | |||| Sbjct 240181 ATATTATAGTCGGACAAGGTACGTCCATCCTCAAGCTGCTTGCCAGCAAAGATGAGTCTC 240122 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 ||||| |||||||| || || || |||||||| ||||| ||||||||| || | Sbjct 240121 TGTTGGTCAGGTGGGATACCCTCCTTATCTTGGATTTTGGCTTTTACATTTTCAATTGTG 240062 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 ||||| | || || || || || ||||| || || || | || || | || |||||| Sbjct 240061 TCTGATGGCTCAACCTCCAGGGTGATGGTCTTCCCGGTAAGAGTCTTCACGAAGATCTGC 240002 Query 192535 AT 192536 || Sbjct 240001 AT 240000 >seq3560 Length=1522174 Score = 127 bits (140), Expect = 4e-24 Identities = 138/183 (75%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| || ||||| || | |||||| |||| |||| ||||||||||||||||| ||||| Sbjct 967955 GATGTTGTAATCTGAGAGTGTTCGGCCATCCTCCAGCTGTTTACCAGCAAAGATCAATCT 967896 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| || |||||||| || ||||| || || || ||||| || ||||| || | Sbjct 967895 CTGCTGGTCAGGTGGAATGCCTTCCTTGTCCTGGATTTTTGCCTTAACATTCTCAATGGT 967836 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 ||||| | ||| ||||| |||||||| || || ||||| | ||| || | ||| || || Sbjct 967835 GTCTGAAGGTTCCACTTCCAGAGTAATTGTCTTTCCAGTGAGTGTCTTGACAAAGATTTG 967776 Query 192534 CAT 192536 ||| Sbjct 967775 CAT 967773 Score = 125 bits (138), Expect = 1e-23 Identities = 137/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || ||||||||||| | ||| || |||| |||| ||||| |||||||| || |||||| Sbjct 967388 ATGTTATAATCAGAGAGTGTACGGCCATCTTCCAGCTGTTTGCCAGCAAATATCAATCTC 967329 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 ||||| || ||||| || |||||||| || || ||||| || ||||| |||| Sbjct 967328 TGTTGGTCTGGTGGAATGCCTTCTTTGTCCTGGATTTTTGCCTTAACATTCTCAATAGTG 967269 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 ||||| | || ||||| || || ||||| || ||||| | ||| |||| ||||| ||| Sbjct 967268 TCTGATGGCTCCACTTCCAGTGTGATGGTCTTTCCAGTCAGTGTCTTAACGAATATTTGC 967209 Query 192535 AT 192536 || Sbjct 967208 AT 967207 Score = 123 bits (136), Expect = 5e-23 Identities = 138/183 (75%), Gaps = 1/183 (1%) Strand=Plus/Minus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || || ||||| || | |||||| |||| |||| ||||||||||||||||| |||||| Sbjct 973142 ATGTTGTAATCTGAGAGTGTTCGGCCATCCTCCAGCTGTTTACCAGCAAAGATCAATCTC 973083 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || || |||||||| || ||||| || ||||| || || || ||||| || | | Sbjct 973082 TGCTGGTCAGGTGGAATGCCTTCCTTGTCTTGGATCTT-GCCTTAACATTCTCAATCGTA 973024 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 ||||| | ||| ||||| || ||||| ||||| || || | ||||| | || |||||| Sbjct 973023 TCTGATGGTTCCACTTCAAGGGTAATAGTTTTTCCCGTAAGAGTTTTGACGAAGATCTGC 972964 Query 192535 ATT 192537 ||| Sbjct 972963 ATT 972961 Score = 120 bits (132), Expect = 6e-22 Identities = 137/184 (74%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| ||||||||||| | |||| |||| |||| ||||||||||||||||| ||||| Sbjct 966172 GATGTTATAATCAGAAAGAGTTCTGCCATCCTCCAGCTGTTTACCAGCAAAGATCAATCT 966113 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| || |||||||| || ||||| || || || || || || || || |||| Sbjct 966112 CTGCTGGTCAGGTGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTAACGTTTTCAATAGT 966053 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 ||||| | ||| ||||| || ||||| ||||| || || | ||||| | || ||||| Sbjct 966052 GTCTGATGGTTCCACTTCAAGGGTAATAGTTTTTCCCGTAAGAGTTTTGACGAAGATCTG 965993 Query 192534 CATT 192537 |||| Sbjct 965992 CATT 965989 Score = 116 bits (128), Expect = 7e-21 Identities = 136/184 (74%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| |||||||| || | |||| |||| |||| ||||| ||||| ||||| ||||| Sbjct 965867 GATGTTATAATCTGAAAGGGTTCTGCCATCTTCCAGCTGTTTGCCAGCGAAGATCAATCT 965808 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 |||||| || || || || ||||| |||||||| || || || || || || | Sbjct 965807 CTGTTGGTCGGGAGGAATGCCTTCCTTATCTTGGATCTTGGCCTTGACGTTCTCAATGGT 965748 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 ||||||| ||| ||||| | ||| || ||||| ||||| | || |||| |||||| || Sbjct 965747 GTCTGACGGTTCCACTTCCAAAGTGATAGTTTTTCCAGTCAGAGTCTTAACAAATATTTG 965688 Query 192534 CATT 192537 |||| Sbjct 965687 CATT 965684 >seq1460 Length=1689650 Score = 96.9 bits (106), Expect = 7e-15 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 |||||| ||||| || | |||| |||| || | ||| || ||||| || || | || Sbjct 1136608 GATATTGTAATCTGAAAGAGTTCTCCCATCTTCAAGTTGCTTTCCAGCGAAAATAAGCCT 1136667 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 || || |||||||| |||||||||||||| || |||||| || ||||| || | Sbjct 1136668 TTGCTGGTCAGGTGGAATTCCTTCTTTATCCTGAATTTTAGCCTTCACATTTTCAATGGT 1136727 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 || | | || || || || || || |||||||| ||||| ||||| | || ||||| Sbjct 1136728 GTCCGCTGGCTCAACCTCAAGGGTTATCGTTTTACCCGTTAAGGTTTTTACGAAAATCTG 1136787 Query 192534 CAT 192536 ||| Sbjct 1136788 CAT 1136790 Score = 84.2 bits (92), Expect = 4e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 192327 TACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATC 192386 ||| || ||||| || | ||||| ||||||||||| ||||| ||| | ||| || Sbjct 729317 TACCAAGTGTAAGGTGGATTCTTTCTGAATATTATAATCTGATAAAGTTTTATTATCCTC 729376 Query 192387 CAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCT 192435 || || |||||||||||||| |||||||| |||||||| || || ||| Sbjct 729377 TAACTGCTTACCAGCAAAGATCAATCTCTGCTGATCAGGGGGAATGCCT 729425 >seq615 Length=2534639 Score = 96.9 bits (106), Expect = 7e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 50114 AGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGC 50173 ||| |||||||| ||||| ||| |||||| |||||||||||| ||||| ||||| Sbjct 1867294 AGAGTACATTTCCGAATGAACATTTTCCATGGCTATTTGAAATCCGTAAAAACACCTTGC 1867353 Query 50174 TTCTGAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATC 50233 ||||| | |||||||| | ||||||||| || | ||| || || || ||||| Sbjct 1867354 TTCTGGAATTTGAACTTCTTGACTGAATCGTTCCACCAGATTTTCGTTGACGATTCCATC 1867413 Query 50234 AGATGCTGCGAAGAATGCTAAAACGT 50259 ||||| ||||| || ||||| |||| Sbjct 1867414 CGATGCCGCGAAAAAAGCTAATACGT 1867439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984351769634100