Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ladona_20fulva_20[genbank_20GCA_5F000376725.1_202013-04-23] 10,166 sequences; 1,158,111,285 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq7337 136 7e-27 seq3560 125 1e-23 seq1460 113 8e-20 seq615 98.7 2e-15 >seq7337 Length=451322 Score = 136 bits (150), Expect = 7e-27 Identities = 141/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 ||||| || ||||| | | || | || ||||| ||||| ||||| ||||| ||||| Sbjct 238491 ATATTGTAGTCTGAGAGCGTGCGGCCATCTTCCAACTGTTTGCCAGCGAAAATCAATCTT 238432 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || || ||||| || ||||||||||| || || ||||| |||||||| |||||| Sbjct 238431 TGCTGATCAGGGGGAATTCCTTCTTTGTCCTGAATTTTGGCCTTTACATTCTCAATAGTA 238372 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || | ||| ||||| | ||| ||||| || ||||| || ||||||| ||| |||||| Sbjct 238371 TCGGAGGCTTCGACTTCCAAAGTGATGGTCTTCCCAGTCAAAGTTTTAACGAAGATCTGC 238312 Query 172068 ATTTT 172072 ||||| Sbjct 238311 ATTTT 238307 Score = 111 bits (122), Expect = 3e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 171879 TCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAA 171938 ||||| ||||||||| || || || | ||| | || || | || || |||||||| Sbjct 240190 TCTTTCTGAATATTATAGTCGGACAAGGTACGTCCATCCTCAAGCTGCTTGCCAGCAAAG 240131 Query 171939 ATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTA 171998 || | |||||||||||||||||| || || || |||||||| ||||| ||||||||| Sbjct 240130 ATGAGTCTCTGTTGGTCAGGTGGGATACCCTCCTTATCTTGGATTTTGGCTTTTACATTT 240071 Query 171999 GTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATG 172058 || || ||||| | || || || || || ||||| || || || | || || | | Sbjct 240070 TCAATTGTGTCTGATGGCTCAACCTCCAGGGTGATGGTCTTCCCGGTAAGAGTCTTCACG 240011 Query 172059 AATATCTGCAT 172069 || |||||||| Sbjct 240010 AAGATCTGCAT 240000 >seq3560 Length=1522174 Score = 125 bits (138), Expect = 1e-23 Identities = 139/184 (76%), Gaps = 1/184 (1%) Strand=Plus/Minus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 ||| || |||||||| | | ||| | || |||| |||||||||||||| || ||||| Sbjct 973143 AATGTTGTAATCTGAGAGTGTTCGGCCATCCTCCAGCTGTTTACCAGCAAAGATCAATCT 973084 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||| ||||||||||| || ||||| || ||||| || || || ||||| || || Sbjct 973083 CTGCTGGTCAGGTGGAATGCCTTCCTTGTCTTGGATCTT-GCCTTAACATTCTCAATCGT 973025 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 |||||| | ||| ||||| || ||||| ||||| || || | ||||| | ||| ||||| Sbjct 973024 ATCTGATGGTTCCACTTCAAGGGTAATAGTTTTTCCCGTAAGAGTTTTGACGAAGATCTG 972965 Query 172067 CATT 172070 |||| Sbjct 972964 CATT 972961 Score = 123 bits (136), Expect = 5e-23 Identities = 137/183 (75%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 ||| |||||||| || | | || | || |||| ||||| |||||||| || ||||| Sbjct 967389 AATGTTATAATCAGAGAGTGTACGGCCATCTTCCAGCTGTTTGCCAGCAAATATCAATCT 967330 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||||||||| ||||| || |||||||| || || ||||| || ||||| ||||| Sbjct 967329 CTGTTGGTCTGGTGGAATGCCTTCTTTGTCCTGGATTTTTGCCTTAACATTCTCAATAGT 967270 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 ||||| | || ||||| || || ||||| || ||||| | ||| |||| |||||| || Sbjct 967269 GTCTGATGGCTCCACTTCCAGTGTGATGGTCTTTCCAGTCAGTGTCTTAACGAATATTTG 967210 Query 172067 CAT 172069 ||| Sbjct 967209 CAT 967207 Score = 118 bits (130), Expect = 2e-21 Identities = 136/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || |||||||| || | || || | || |||| |||||||||||||| || |||||| Sbjct 966171 ATGTTATAATCAGAAAGAGTTCTGCCATCCTCCAGCTGTTTACCAGCAAAGATCAATCTC 966112 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || ||||||||||| || ||||| || || || || || || || || ||||| Sbjct 966111 TGCTGGTCAGGTGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTAACGTTTTCAATAGTG 966052 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 ||||| | ||| ||||| || ||||| ||||| || || | ||||| | ||| |||||| Sbjct 966051 TCTGATGGTTCCACTTCAAGGGTAATAGTTTTTCCCGTAAGAGTTTTGACGAAGATCTGC 965992 Query 172068 ATT 172070 ||| Sbjct 965991 ATT 965989 Score = 116 bits (128), Expect = 7e-21 Identities = 135/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || || |||||||| | | ||| | || |||| |||||||||||||| || |||||| Sbjct 967954 ATGTTGTAATCTGAGAGTGTTCGGCCATCCTCCAGCTGTTTACCAGCAAAGATCAATCTC 967895 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || ||||||||||| || ||||| || || || ||||| || ||||| || || Sbjct 967894 TGCTGGTCAGGTGGAATGCCTTCCTTGTCCTGGATTTTTGCCTTAACATTCTCAATGGTG 967835 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 ||||| | ||| ||||| |||||||| || || ||||| | ||| || | || || ||| Sbjct 967834 TCTGAAGGTTCCACTTCCAGAGTAATTGTCTTTCCAGTGAGTGTCTTGACAAAGATTTGC 967775 Query 172068 AT 172069 || Sbjct 967774 AT 967773 Score = 109 bits (120), Expect = 1e-18 Identities = 134/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || ||||||||||| | | || | || |||| ||||| ||||| || || |||||| Sbjct 965866 ATGTTATAATCTGAAAGGGTTCTGCCATCTTCCAGCTGTTTGCCAGCGAAGATCAATCTC 965807 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 |||||||| || || || ||||| |||||||| || || || || || || || Sbjct 965806 TGTTGGTCGGGAGGAATGCCTTCCTTATCTTGGATCTTGGCCTTGACGTTCTCAATGGTG 965747 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 ||||||| ||| ||||| | ||| || ||||| ||||| | || |||| ||||| ||| Sbjct 965746 TCTGACGGTTCCACTTCCAAAGTGATAGTTTTTCCAGTCAGAGTCTTAACAAATATTTGC 965687 Query 172068 ATT 172070 ||| Sbjct 965686 ATT 965684 Score = 107 bits (118), Expect = 3e-18 Identities = 134/184 (73%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 ||| || ||||| || | | ||| | || || | || || || ||||| || || || Sbjct 971172 AATGTTGTAATCAGAGAGGGTTCGGCCATCTTCAAGCTGCTTTCCTGCAAAGATCAACCT 971113 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||||||||||||||| || ||||| || ||||| || || || || || ||||| Sbjct 971112 CTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGGATCTTGGCCTTCACGTTCTCAATAGT 971053 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 ||||||| || ||||| ||||| || ||||| || || | ||| |||| ||| ||||| Sbjct 971052 GTCTGACGGCTCCACTTCAAGAGTTATAGTTTTCCCTGTAAGTGTCTTAACGAAGATCTG 970993 Query 172067 CATT 172070 |||| Sbjct 970992 CATT 970989 Score = 105 bits (116), Expect = 1e-17 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 ||| || || ||||| | | || | || || ||||| || ||||||||||| | ||| Sbjct 965571 AATGTTGTAGTCTGAAAGTGTGCGGCCATCTTCTAATTGCTTTCCAGCAAAAATCAGTCT 965512 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||||||||| || || ||||| || |||||||| |||||| || ||||| || || Sbjct 965511 CTGTTGGTCGGGCGGGATTCCCTCCTTATCTTGAATTTTAGCCTTCACATTTTCAATTGT 965452 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 ||| || | || ||||| || ||||| || || || || | || || | ||| ||||| Sbjct 965451 ATCAGAAGGCTCAACTTCGAGGGTAATAGTCTTCCCTGTAAGGGTCTTGACGAAGATCTG 965392 Query 172067 CAT 172069 ||| Sbjct 965391 CAT 965389 >seq1460 Length=1689650 Score = 113 bits (124), Expect = 8e-20 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 ||||| |||||||| | || || | || || | ||| || ||||| ||||| | || Sbjct 1136609 ATATTGTAATCTGAAAGAGTTCTCCCATCTTCAAGTTGCTTTCCAGCGAAAATAAGCCTT 1136668 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || ||||||||||| |||||||||||||| || |||||| || ||||| || || Sbjct 1136669 TGCTGGTCAGGTGGAATTCCTTCTTTATCCTGAATTTTAGCCTTCACATTTTCAATGGTG 1136728 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || | | || || || || || || |||||||| ||||| ||||| | ||| |||||| Sbjct 1136729 TCCGCTGGCTCAACCTCAAGGGTTATCGTTTTACCCGTTAAGGTTTTTACGAAAATCTGC 1136788 Query 172068 AT 172069 || Sbjct 1136789 AT 1136790 >seq615 Length=2534639 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 39416 AGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGC 39475 ||| |||||||| ||||| ||| |||||| |||||||||||| ||||| |||||| Sbjct 1867294 AGAGTACATTTCCGAATGAACATTTTCCATGGCTATTTGAAATCCGTAAAAACACCTTGC 1867353 Query 39476 TTCTGAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATC 39535 ||||| | |||||||| | ||||||||| || | ||| || || || ||||| Sbjct 1867354 TTCTGGAATTTGAACTTCTTGACTGAATCGTTCCACCAGATTTTCGTTGACGATTCCATC 1867413 Query 39536 AGATGCTGCGAAGAATGCTAAAAC 39559 ||||| ||||| || ||||| || Sbjct 1867414 CGATGCCGCGAAAAAAGCTAATAC 1867437 Score = 84.2 bits (92), Expect = 4e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 39148 CTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTT 39207 ||||||||| || |||| ||| || ||| || || || ||||| | ||||||||||| Sbjct 1866952 CTTCGTCCCGCGAAATAAGTTCGTTGGAAAACGTCAAACCAGGCATAAGTCCTCTCTTTT 1867011 Query 39208 TAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCCACACACGCAAATG 39267 | |||||||||||||| ||||| | |||||||| || || || || ||||||| Sbjct 1867012 TCAGCCAAAATATTGAAGCAAATGATCCCGAAAAGAAAATTCCTTCTACTGCTGCAAATG 1867071 Query 39268 C 39268 | Sbjct 1867072 C 1867072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905020979842800