Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ladona_20fulva_20[genbank_20GCA_5F000376725.1_202013-04-23] 10,166 sequences; 1,158,111,285 total letters Query= NC_021306.1 Length=75736 Score E Sequences producing significant alignments: (Bits) Value seq3501 197 7e-46 seq2686 161 5e-35 >seq3501 Length=12068 Score = 197 bits (218), Expect = 7e-46 Identities = 402/590 (68%), Gaps = 29/590 (5%) Strand=Plus/Plus Query 65221 CGCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGA 65280 ||||| ||||| || || || |||| ||||| |||||||| ||| || ||||| Sbjct 2085 CGCCTTTATCGATGCCGAACATGCCCTTGACCCGCGATACGCCAAAAAGCTGGGCGTGGA 2144 Query 65281 CCTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGAT---CGT 65337 | |||||||||| || | ||||||||||||||||||||||| ||||| || || Sbjct 2145 CATCGACAACCTGCTGATATCCCAGCCGGACACTGGCGAGCAGGCACTGGAAATTACCGA 2204 Query 65338 TGACCTCCT-CGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCC 65396 || || | ||| || || | | | || ||||||| ||||| |||||||| Sbjct 2205 TGGACTGGTACGT----TCCGGTGCCATCAGCGTCATCGTCGTCGACTCGGTGGCGGCAT 2260 Query 65397 TGGTGCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGC 65456 || ||| || || |||| || || ||||| |||| ||| | ||| |||| || | Sbjct 2261 TGACGCCCAAGGCGGAAATCGAGGGAGAAATCGGTGACACGCACATGGGCGTGCATGCCC 2320 Query 65457 GCCTCATGTCGCAGGCCATGCGCAAGCTCACCGGCACCATCTCCAGCACCAACACGCTGA 65516 || | ||| ||||| ||||||||||| |||| |||| | || || || | Sbjct 2321 GCATGATGAGTCAGGCGATGCGCAAGCTGCGGGGCAGCATCAATACCAGTAAGACCATCG 2380 Query 65517 CGCTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAAC---G 65573 | | |||||||| ||||| ||| |||||| ||| | |||| ||| | Sbjct 2381 TCATTTTTATCAACCAGCTGCGCATGAAAATCGGC---GTGATGTTCGGC---AACCCGG 2434 Query 65574 AGACCACCACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTC 65633 | ||||| || |||||||| ||| | | |||||| || || || ||||||||||| || | Sbjct 2435 AAACCACTACCGGCGGCAATGCTCTCAAGTTCTATGCGTCGGTGCGCATGGATGTTCGCC 2494 Query 65634 GCATCGCCACCGAGAAG-GAA--GGCGATGAGG---CTGTCG------GCAACCGCACCC 65681 |||||| | || ||| | | ||||| ||| |||| | ||| | |||| Sbjct 2495 GCATCGGCGCCATCAAGAGCACCGGCGACAAGGACCCTGTGGTGATTGGCAGCGAAACCC 2554 Query 65682 GGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAACGCCGAGTTCTCCGTCG 65741 | || |||||||||||||| || |||| |||||| |||| | || |||||| | Sbjct 2555 GCGTCAAGGTCGTCAAGAATAAAGTGGCGCCGCCGTTCCGCCAGGCTGAGTTCCAACTGT 2614 Query 65742 TGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCGACCTGGCCGTG 65791 ||||||| || || || || |||| | || | |||||||||| |||| Sbjct 2615 TGTACGGCGAAGGAATTTCCCGTGCCGGTGAGGTGCTCGACCTGGGCGTG 2664 >seq2686 Length=5122 Score = 161 bits (178), Expect = 5e-35 Identities = 357/528 (68%), Gaps = 17/528 (3%) Strand=Plus/Plus Query 65138 GAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACG-CGGTG---GC 65193 |||||||||||||| || || || || ||| | || ||| || | |||| || Sbjct 4605 GAAATCTACGGCCCCGAGTCGTCCGGCAAGACCACC----GTCGCCCTGTCGGTCATTGC 4660 Query 65194 CAATGCGCAGAAGGCCGG-TGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTGGACC 65252 | || ||| ||||| | |||| || |||| ||||| || |||||| | || || | Sbjct 4661 CTGCGCCCAGCGCGCCGGCTTGCAATGC-GCCTTTATCGATGCCGAGCACACGCTCGATC 4719 Query 65253 CTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCGGACA 65312 | ||||| || ||| || || || ||| | ||| | | ||||| |||| Sbjct 4720 CGCGTTACGCGCAGCAGCTGGGCGTCGATATCGGTGAACTCCTCATCTCCCAGCCCGACA 4779 Query 65313 CTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTC--CAT 65370 | ||||||||||| ||||| ||| |||| | | || || |||| | ||| | | Sbjct 4780 CCGGCGAGCAGGCGCTGGAAATCTGTGACGCCTTGGTGCGTTCCGGCG--CCGTCGGCGT 4837 Query 65371 CGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCGG 65430 || || || || || || || |||||||||||| ||| || ||||| || ||||| Sbjct 4838 GGTGGTGGTCGATTCCGTCGCCGCCCTGGTGCCGAAAAACGAACTGGAAGGGGAGATCGG 4897 Query 65431 GGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACCGG 65490 ||| || | |||||||| || ||| | ||| ||||| ||||||||||| | || Sbjct 4898 CGACGCCCAGATGGGCCTGCAGGCCCGCATGATGAGCCAGGCGATGCGCAAGCTGAAGGG 4957 Query 65491 CACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATCGG 65550 || |||| || |||| |||| || | ||| |||||||| ||||| ||||||||| Sbjct 4958 CAGCATCAACACCACCCGCACGGTGGTGATCTTCATCAACCAGCTGCGCATGAAGATCGG 5017 Query 65551 CAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTTGAGGTTCTACGC 65610 |||| | |||| ||| |||||| | |||||||| || | | |||||| || Sbjct 5018 ---CGTGATGTTCGGCAACCCCGAAACCACCGCCGGCGGCAACGCCCTCAAGTTCTATGC 5074 Query 65611 CTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGA 65658 ||| || || | || || ||| || || || || |||||||| || Sbjct 5075 CTCGGTGCGTCTCGACGTGCGTGGCGCCGGCAACGTCAAGGAAGGGGA 5122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242200388107622