Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ladona_20fulva_20[genbank_20GCA_5F000376725.1_202013-04-23] 10,166 sequences; 1,158,111,285 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq3837 113 4e-20 seq3560 89.7 4e-13 >seq3837 Length=2536911 Score = 113 bits (124), Expect = 4e-20 Identities = 196/284 (69%), Gaps = 6/284 (2%) Strand=Plus/Plus Query 34204 GGCGGGTTTTTCAGTATGAAGGTGTTGAGCTTATGCGAGAAGTGTAGCGTGCCGTGATAA 34263 || ||||| |||| ||||| ||||| |||||||| || | | | || || || Sbjct 2313599 GGTGGGTTCTTCAAAATGAATGTGTTCAGCTTATGGTTGATTTCGATGGGACCATGGTAC 2313658 Query 34264 CCGCATGCTTTGCAGCCCTGACAGATAATG---TTCTTTTTAGCGGACACGATGAGCTCA 34320 || || || ||||| ||||| ||| || ||||||| | | ||||| Sbjct 2313659 CCACAAGCCTTGCACGCCTGATTGATTGTGCCTTTCTTTTGATTA---ATTATGAGGCTG 2313715 Query 34321 GTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCAGG 34380 ||||| |||||||||||||| || || | |||||| ||| || || |||||||| || Sbjct 2313716 GTCTCAGGGTTGTCACATTCTGGGCAAAGCACAAAGCGGCGAATAAAGCCATCAAGGAGA 2313775 Query 34381 TCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTAATCG 34440 ||||| | ||| | | || || || || ||||| ||||| || || |||||| |||| Sbjct 2313776 TCCTGCAGCTTTGCAGCATCATGAGATCCATTGACAATGAAACGATCATTTTTGAAATCA 2313835 Query 34441 ACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGG 34484 | || || || || || || || || || |||||||| || || Sbjct 2313836 AATTGTGTCTGGGCACCTAGTTCACATCCAAAGTACTTCGTAGG 2313879 Score = 105 bits (116), Expect = 6e-18 Identities = 121/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 34495 GGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTG 34554 ||||| | || || |||||||| || ||| || ||||||||||| || |||||||| Sbjct 2313999 GGACGACATAGAGCTTTGGCGATCTCAACCATATTAACGATGACAGTTTTAATGCCGTTT 2314058 Query 34555 CCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCC 34614 || ||||| || || || || ||| ||| |||||||| || || ||||| || || Sbjct 2314059 CCTTTTCCCTCAACTTTTGCCAAGAGGCGTGGCATTTTATAACGATAGAATGCATCACTG 2314118 Query 34615 ACATTGCGGTTAACGTTCACAGTCCCCATCGTGGCTGGTGTTA 34657 ||||| ||||| ||||| | | | ||||| |||||| || || Sbjct 2314119 ACATTACGGTTCACGTTTAAACTTCCCATTTTGGCTGATGCTA 2314161 >seq3560 Length=1522174 Score = 89.7 bits (98), Expect = 4e-13 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| || || ||||||||| | || || ||||| |||||| | ||| ||| || Sbjct 965989 AATGCAGATCTTCGTCAAAACTCTTACGGGAAAAACTATTACCCTTGAAGTGGAACCATC 966048 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || ||| | | | || || ||||| ||||| |||||| | || || || Sbjct 966049 AGACACTATTGAAAACGTTAAGGCAAAGATCCAGGACAAGGAAGGCATTCCACCTGACCA 966108 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || ||| | || | ||| ||||||||||||||||||| |||||| | | ||||| || Sbjct 966109 GCAGAGATTGATCTTTGCTGGTAAACAGCTGGAGGATGGCAGAACTCTTTCTGATTATAA 966168 Query 110452 CATTCAAAA 110460 ||| ||||| Sbjct 966169 CATCCAAAA 966177 Score = 89.7 bits (98), Expect = 4e-13 Identities = 134/189 (71%), Gaps = 1/189 (1%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| || || ||||||||| | || || ||||| |||||| | ||| ||| || Sbjct 972961 AATGCAGATCTTCGTCAAAACTCTTACGGGAAAAACTATTACCCTTGAAGTGGAACCATC 973020 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| | | | || || ||||| ||||| |||||| | || || || Sbjct 973021 AGATACGATTGAGAATGTTAAGGC-AAGATCCAAGACAAGGAAGGCATTCCACCTGACCA 973079 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || ||| | || | ||| ||||||||||||||||||| | ||||| | | |||||||| Sbjct 973080 GCAGAGATTGATCTTTGCTGGTAAACAGCTGGAGGATGGCCGAACACTCTCAGATTACAA 973139 Query 110452 CATTCAAAA 110460 |||||| || Sbjct 973140 CATTCAGAA 973148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412790449699838