Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ladona_20fulva_20[genbank_20GCA_5F000376725.1_202013-04-23] 10,166 sequences; 1,158,111,285 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq7813 246 2e-59 seq397 192 4e-43 seq7248 138 8e-27 seq1538 104 2e-16 seq3671 89.7 4e-12 >seq7813 Length=436614 Score = 246 bits (272), Expect = 2e-59 Identities = 613/910 (67%), Gaps = 28/910 (3%) Strand=Plus/Minus Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485 ||||| ||||| ||||||||||| ||||| | || || || ||||||||||||||||| Sbjct 239103 GCAGTGACATTCAGAATACCATTTGCATCAATGTCGAAAGTCACTTCAATTTGAGGGACG 239044 Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545 || || ||||||||||||| || | | ||| | || || || |||||||| Sbjct 239043 CCCCTGGGAGCAGGTGGGATTCCAGTGAGTTCGAATTTGCCAAGCAAGTTGTTATCTTTG 238984 Query 281546 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 281605 || || | ||| || || || | || || ||| | | ||||| || ||||| Sbjct 238983 GTCAAAGCCCTTTCCCCTTCAAACACCTGAATCAAGACTCCTGGCTGATTGTCAGAATAG 238924 Query 281606 GTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGT 281664 ||||| || | |||| | | || ||||| ||||||||||| | ||| | || Sbjct 238923 GTTGTGAA-AGTCTGAGTCTGCTTTGTGGGAATAGTTGTGTTTCTCTTAATCAAGGCAGT 238865 Query 281665 CATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATC-AACTAGGACAA 281723 ||| | |||||||| || |||| ||||||||| ||||| | ||||| ||| | |||| Sbjct 238864 CATTACTCCACCAGCAGTCTCTATACCAAGAGACAGAGGGGCAACATCCAACAACAACAA 238805 Query 281724 TATTTTGAAGTTTTTCATCAG-TTTGAC--CAACAAGAATAGCTGCTTGAATAGCAGCAC 281780 | |||| || | |||| |||| | || ||||| || ||||| | ||||| | Sbjct 238804 G-TCCTGAACTT---CCTCAGATTTGTCTCCATGGAGAATGGCAGCTTGCACTGCAGCCC 238749 Query 281781 CATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT 281840 ||||||||||||||||||||||||| | | | ||| | || ||||||||||| |||| Sbjct 238748 CATATGCAACAGCTTCATCAGGATTGATTGACTTATTCAATTCCTTACCATTGAAGAAAT 238689 Query 281841 TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCAT 281900 ||| || | | ||| ||||| || | | ||| |||||||| || || || |||| Sbjct 238688 CCTGAAGTAGCTTTTGTACTTTAGGGATTCTGGTTGAACCTCCAACCAAAACTATGTCAT 238629 Query 281901 GCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAG 281960 | | || ||| |||| |||| |||| | ||||||| || || || | | Sbjct 238628 GTATTTGCCCTTTGTCCATCTTTGCATCCCTAAGTGCTTTTTCCACTGGCTCCA-TTGTG 238570 Query 281961 CT-CTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAA--GA-GTGACATTA 282016 || | || | || | | | ||| || || | || | ||||| || ||| || Sbjct 238569 CTACGGAAAAGATCAGCATTCAATTCCTCAAACCTTGCACGAGTAATGGATGTG----TA 238514 Query 282017 TAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAG 282075 || ||||| |||||| |||| ||||| | |||||| | | |||||| || ||||| || Sbjct 238513 GAAGTCAATACCTTCGTACAAGGAATCTATTTCAATAGATGCTTGAGTAGATGAAGAAAG 238454 Query 282076 TGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATT-GAT 282134 | | ||| | | ||||| || || | | | || | ||| || | ||| | | Sbjct 238453 GGTTCTTTTGGATCTCTCACAAGCAGTACGCAAGCGCCGCACAGCTCTT--TTATTAGCT 238396 Query 282135 -TCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATG--TTACAAGACGAT 282191 |||||||| ||||||| || |||||||| |||| |||| | ||| | || | | || Sbjct 238395 GTCAAATCTTTTTTATACTTCCTCTTGAACTCTTGAACAAA--ATGGTTCACCATTCTAT 238338 Query 282192 TATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTC 282251 | ||||| ||||| || || | | |||| ||| | || | | |||| |||| | Sbjct 238337 TGTCAAAGTCTTCCCCACCAAGATGGGTATCTCCAGCAGTTGACTTGACTTCAAAAATAC 238278 Query 282252 CATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTA 282311 ||||||||| | | | || || ||| || || || || | ||||| || || | Sbjct 238277 CATCTTCAATTGTTAGTATAGATACGTCAAAAGTGCCTCCTCCAAGGTCAAATATGAGGA 238218 Query 282312 CATTCATTTC 282321 |||| |||| Sbjct 238217 CATTTCTTTC 238208 Score = 178 bits (196), Expect = 1e-38 Identities = 257/361 (71%), Gaps = 4/361 (1%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 |||||||| || ||||| |||| ||||| || ||||||||||| || || | ||||||| Sbjct 237460 TTTTTATCTAGGCCATAGGCAATTGCAGCTGCTGTTGGTTCATTGATTATCCGCAAAACA 237401 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 |||||||| | |||| ||| |||||||| || ||||| || ||||| || ||||||||| Sbjct 237400 TTAAGACCTGAAATTGCTCCAGCATCTTTTGTAGCTTGCCTCTGTGAGTCATTAAAATAT 237341 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGT 282511 ||||| ||||| | ||| ||||||| || || || | ||| || ||| |||| Sbjct 237340 GCAGGTACAGTCACAACAGCATCTGCAACAGTCTTCCCTAGATATGCTTCTGCAGTTTCC 237281 Query 282512 TTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGG--AGAATATTGCTTGGATTCAT 282569 ||||||||||| | || |||||| ||||| ||| || |||| || || ||||| Sbjct 237280 TTCATTTTACTGAGAACCATTGAACTAATTTCTTCAGGAAAGAAGGTT--TTTGATTCTC 237223 Query 282570 TTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAAT 282629 | || | || | | | ||||| ||| | | || || | ||| ||||||| Sbjct 237222 CCTTGTAGGTCACCTTCATTTTGGGTTTGCCACCTTCGCTTATCACATCAAAAGGCCAAT 237163 Query 282630 ATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCAT 282689 |||||| || || || ||| | |||| ||| || ||||| || | |||||||| Sbjct 237162 GTTTCATGTCCGACTGGACAGTGGCATCATCAAACCTCCTGCCAATCAACCTTTTTGCAT 237103 Query 282690 C 282690 | Sbjct 237102 C 237102 Score = 96.9 bits (106), Expect = 3e-14 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749 |||||||||| || | ||||| | || |||||| || |||||||| ||||| | Sbjct 236698 CAAAAATAGTGTTATTGGGATTCATAGCTACTTGATTCTTAGCTGCATCACCAATTAATC 236639 Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809 ||| || ||||| || | ||||| || ||||| | ||| ||||||||||| || | Sbjct 236638 TTTCGGTGTCTGTGAAGGCTACATAGCTCGGGGTTGTTCTATTTCCTTGATCATTAGCTA 236579 Query 282810 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 282869 | |||||||| || |||| || | || || || ||| | | || || || | ||||| Sbjct 236578 TTATTTCAACCTTTCCATGCTGAAAAACTCCAACGCAAGAATAGGTAGTACCAAGATCAA 236519 Query 282870 TACCAATAGCA 282880 | |||| |||| Sbjct 236518 TTCCAACAGCA 236508 >seq397 Length=387284 Score = 192 bits (212), Expect = 4e-43 Identities = 589/901 (65%), Gaps = 10/901 (1%) Strand=Plus/Minus Query 281411 GTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACT 281470 || || |||||| || || ||||| | ||||| ||||| || | ||| || || ||| Sbjct 67784 GTAGACTTATCAATAGCCGTGACATTCAAGATACCGTTGGCGTCGATATCGAAGGTAACT 67725 Query 281471 TCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGA 281530 || |||||||| || |||| | || || || || || | | || | |||| | Sbjct 67724 TCGATTTGAGGAACTCCTCGAGGTGCCGGAGGAATGCCGGTAAGCTCGAACTTGCCCAAA 67665 Query 281531 TTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTT 281590 || |||||||| || | | || || || ||| | | |||||| || | | Sbjct 67664 AGGTTGTTATCTTTGGTCATGGTACGCTCTCCTTCGTACACTTGGATCAACACACCTGGC 67605 Query 281591 TGATTATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAA-GGAATTGTTGTGTTTCT 281649 || || || || || || || || |||| | | | | ||||| || ||||||| Sbjct 67604 TGGTTGTCGGAGTAGGTGGTGAAGG-TCTGAGTCTGCTTCGTTGGAATGGTGGTGTTTCG 67546 Query 281650 ATCAATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGAC 281709 | || | ||||| | |||||||| || || | |||||| |||||||||||||| Sbjct 67545 CTTGATGAGCGCAGTCATGACGCCACCAGCCGTCTCGATACCAAGGGAAAGAGGAGTGAC 67486 Query 281710 ATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTG 281769 ||||| |||| || || ||| | |||| | | || ||||||||| || || Sbjct 67485 ATCAAGGAGGAGAAGATCTTGTACAGCTTCAGACTTATCGCCGTGAAGAATAGCAGCCTG 67426 Query 281770 AATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACC 281829 | |||||| || || || ||||||||||| || || | | | || |||| || || Sbjct 67425 GACAGCAGCTCCGTAAGCCACAGCTTCATCGGGGTTGATGGACTTGTTAAGTTCCTTGCC 67366 Query 281830 ATTGAAAAAAT-TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTA 281888 ||||| |||| ||| || | || | | |||||||||||| | || ||||| || | Sbjct 67365 GTTGAAGAAATCTTGCAACAGCTTCTGG-ATCTTAGGAATACGGGTGGAACCTCCGACGA 67307 Query 281889 ATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGG 281948 || || || || | || || || |||| || | ||| | | ||| ||||| | Sbjct 67306 GAACGATGTCGTGGATTTGAGACTTGTCCATCTTGGCATCTCGGAGAGATTTCTCAACTG 67247 Query 281949 GTTCAAGACCAGCT-CTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGA 282007 |||| | | ||| | |||| || | |||||||| || | || || || | Sbjct 67246 GTTCCA-AGGTGCTGCGGAACAGATCGGCGTTCAGTTCTTCAAACCTGGCCCTGGTGATG 67188 Query 282008 GTGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAA 282067 | | || ||||||||||||||||||||| ||||| | ||||| | | ||| || ||| Sbjct 67187 GAGGTATAATAATCAATTCCTTCGAACAAGGAATCGATCTCAATACTGGCTTGGGTGGAA 67128 Query 282068 GAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCT--TTTG 282125 || || | | ||| || || | |||||||| || || ||||||| | ||| ||| Sbjct 67127 GAGGACAAGGTACGCTTTGCCCTCTCACATGCAGTTCTCAGTCTTCTAACAGCTCGCTTG 67068 Query 282126 CTGATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAA 282185 | | || | | ||| |||| || || |||||||| |||| || | | || | Sbjct 67067 TT--TGGAGTGAGATCCTTTTTGTACTTCCTCTTGAACTCTTGCACGAAGTGGTTAACCA 67010 Query 282186 GACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGA 282245 | ||||| || || || |||||||| | || | ||| | || | | |||| | Sbjct 67009 TCCTGTTATCGAAGTCCTCTCCTCCCAAGTGGGTGTCTCCAGCGGTGGACTTGACTTCAA 66950 Query 282246 AAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAA 282305 | | |||||||| | | || || | |||||| || |||||||||| ||| || | Sbjct 66949 AGATGCCATCTTCGATGGTCAGAATGGAGACATCAAAAGTGCCACCACCCAGATCGAAGA 66890 Query 282306 T 282306 | Sbjct 66889 T 66889 Score = 95.1 bits (104), Expect = 9e-14 Identities = 121/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 282707 GGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAAT 282766 ||||| | || |||||| ||| || ||||||||||| || |||| || || || || Sbjct 66202 GGATTCATGGCCACTTGATTTTTCGCGGCATCTCCAATTAGCCGTTCGGTGTCCGTGAAC 66143 Query 282767 GAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCA 282826 | ||||| ||||| || | |||||||| ||||| || || ||||| |||||||| Sbjct 66142 GCCACATAACTGGGAGTGGTCCTGTTACCTTGGTCATTGGCGATGATTTCCACTTTACCG 66083 Query 282827 TTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATACC 282873 | ||| ||||||| || || |||| || || || |||||||| Sbjct 66082 TGTTGGAATACACCCACGCACGAGTAAGTGGTGCCCAAGTCAATACC 66036 >seq7248 Length=358010 Score = 138 bits (152), Expect = 8e-27 Identities = 145/190 (76%), Gaps = 3/190 (2%) Strand=Plus/Minus Query 282284 GTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGA 282343 || |||||||| | |||||| | || |||||| |||| | ||| | ||||| ||| Sbjct 29770 GTGCCACCACCAAGATCAAACACCAGAACATTCTTTTC---GCCTTCTCTCTTATCCAGA 29714 Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 ||||| |||| ||||||||||||||||| ||||| || |||| ||| | ||| |||| | Sbjct 29713 CCATATGCAATCGCAGCAGCAGTTGGTTCGTTAATTATCCTCATAACCTGAAGTCCAGAA 29654 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 ||| | |||||||| || || ||||| | |||| |||||| ||||| || || ||||| Sbjct 29653 ATTGTACCTGCATCCTTCGTAGCTTGACGCTGTGCATCGTTGAAATAAGCTGGGACAGTG 29594 Query 282464 ATAACGGCAT 282473 | || |||| Sbjct 29593 ACGACAGCAT 29584 Score = 87.8 bits (96), Expect = 1e-11 Identities = 131/183 (72%), Gaps = 5/183 (3%) Strand=Plus/Minus Query 282665 TCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGC-AGCTTG 282723 || || ||||| | |||||| |||||||| | ||||| ||| || | |||| | Sbjct 29154 TCCCTCCCAATAAGTCGTTTGGCATCAAATACCGTATTCTCTGGGTTCGTGGTGAGCT-G 29096 Query 282724 ATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTC---TGTAAATGAAACATATGATGG 282780 || || || || || ||||| ||| | || || |||||| | || || ||||| Sbjct 29095 ATTCTTAGCCGCGTCACCAATGAGACGCTCGCCGTCCGGTGTAAAAGCCACGTAAGATGG 29036 Query 282781 AGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACC 282840 |||| |||||||||||||||| || || || |||||||| ||| |||| ||||||| Sbjct 29035 AGTTATGCGATTACCTTGATCGTTAGCGATGATTTCAACCCGACCGTTTTTATATACACC 28976 Query 282841 TAC 282843 ||| Sbjct 28975 TAC 28973 >seq1538 Length=1185135 Score = 104 bits (114), Expect = 2e-16 Identities = 99/127 (78%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 400295 AATGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTTA 400354 ||||||| ||||| ||||||||||||||||||| ||| |||| ||| | ||||| || Sbjct 152664 AATGTACATTAATTCTGACAGAGGGAGATTCAGCCAAATCATTGGCTGTCTCTGGGCTGG 152605 Query 400355 ATGTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTA 400414 ||| ||||||||||| | ||||| ||||| ||| | || || ||||| | ||||| | Sbjct 152604 GTGTCATTGGAAGAGACAAGTATGGTGTTTTTCCATTAAGGGGTAAACTGCTTAATGTGA 152545 Query 400415 GGGATGC 400421 | || || Sbjct 152544 GAGAAGC 152538 >seq3671 Length=787719 Score = 89.7 bits (98), Expect = 4e-12 Identities = 117/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 432278 AAGATTGAGAGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATAT 432337 ||| |||| || |||||||| | ||| |||||||| | ||||||||||| || ||| | Sbjct 417638 AAGGTTGAAGGGGAAAGAAGGCAGGATTCGAGGAAATCTCATGGGAAAGCGAGTGGATTT 417697 Query 432338 GTCTGCACGTACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCC 432397 || || ||||| || || ||| | ||||||||| | | | |||| ||||| || Sbjct 417698 TTCAGCCCGTACTGTCATCACTCCAGATCCTAATCTGCGAATTGACCAAGTCGGTGTGCC 417757 Query 432398 TCTCATTATTGCGAAAAATCTTACTTTTGACGAAATTGTAAC 432439 || |||||| | ||||| |||||| |||||||| || Sbjct 417758 TCGATCTATTGCTCAGAATCTCACTTTTCCAGAAATTGTTAC 417799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740131292361516