Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ladona_20fulva_20[genbank_20GCA_5F000376725.1_202013-04-23] 10,166 sequences; 1,158,111,285 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq3560 156 8e-33 seq1460 145 1e-29 seq7337 140 6e-28 seq280 93.3 8e-14 >seq3560 Length=1522174 Score = 156 bits (172), Expect = 8e-33 Identities = 149/191 (78%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 82621 CTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGA 82680 |||| || || |||||||| || || |||| || ||||| || ||||| ||||| |||| Sbjct 965874 CTTTTTGGATGTTATAATCTGAAAGGGTTCTGCCATCTTCCAGCTGTTTGCCAGCGAAGA 965815 Query 82681 TTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTT 82740 | | ||| ||||| || ||||| || |||||||||||||| ||||| || || || || | Sbjct 965814 TCAATCTCTGTTGGTCGGGAGGAATGCCTTCCTTATCTTGGATCTTGGCCTTGACGTTCT 965755 Query 82741 CAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAA 82800 |||| || || ||||| ||||||||||| || || || || |||| ||||| |||| Sbjct 965754 CAATGGTGTCTGACGGTTCCACTTCCAAAGTGATAGTTTTTCCAGTCAGAGTCTTAACAA 965695 Query 82801 ATATCTGCATT 82811 |||| |||||| Sbjct 965694 ATATTTGCATT 965684 Score = 145 bits (160), Expect = 1e-29 Identities = 146/190 (77%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 82621 CTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGA 82680 |||| || || || || || || || | | || ||||||| ||| ||||||||||| | Sbjct 965578 CTTTTTGAATGTTGTAGTCTGAAAGTGTGCGGCCATCTTCTAATTGCTTTCCAGCAAAAA 965519 Query 82681 TTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTT 82740 | ||||| ||||| || || || ||||| |||||||||||||| || || || ||||||| Sbjct 965518 TCAGTCTCTGTTGGTCGGGCGGGATTCCCTCCTTATCTTGAATTTTAGCCTTCACATTTT 965459 Query 82741 CAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAA 82800 |||| |||||| ||| || ||||| | || || ||||| ||||| | ||||| || | Sbjct 965458 CAATTGTATCAGAAGGCTCAACTTCGAGGGTAATAGTCTTCCCTGTAAGGGTCTTGACGA 965399 Query 82801 ATATCTGCAT 82810 | |||||||| Sbjct 965398 AGATCTGCAT 965389 Score = 131 bits (144), Expect = 3e-25 Identities = 143/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 82621 CTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGA 82680 ||||||| || ||||||||||| || | | || ||||| || ||||| |||||||| | Sbjct 967396 CTTTCTGAATGTTATAATCAGAGAGTGTACGGCCATCTTCCAGCTGTTTGCCAGCAAATA 967337 Query 82681 TTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTT 82740 | | ||| ||||| ||||| || || ||||| || || || || ||||| || ||||| | Sbjct 967336 TCAATCTCTGTTGGTCTGGTGGAATGCCTTCTTTGTCCTGGATTTTTGCCTTAACATTCT 967277 Query 82741 CAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAA 82800 |||| || || || || ||||||| || || ||||| || |||| ||||| || | Sbjct 967276 CAATAGTGTCTGATGGCTCCACTTCCAGTGTGATGGTCTTTCCAGTCAGTGTCTTAACGA 967217 Query 82801 ATATCTGCAT 82810 |||| ||||| Sbjct 967216 ATATTTGCAT 967207 Score = 131 bits (144), Expect = 3e-25 Identities = 143/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 82621 CTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGA 82680 ||||||| || || ||||| || || ||| || || || || ||||| |||||||||| Sbjct 967962 CTTTCTGGATGTTGTAATCTGAGAGTGTTCGGCCATCCTCCAGCTGTTTACCAGCAAAGA 967903 Query 82681 TTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTT 82740 | | ||| || || || || || || |||||||| || || || ||||| || ||||| | Sbjct 967902 TCAATCTCTGCTGGTCAGGTGGAATGCCTTCCTTGTCCTGGATTTTTGCCTTAACATTCT 967843 Query 82741 CAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAA 82800 |||| || || |||||| ||||||| ||| || ||||| || || | ||||| |||| Sbjct 967842 CAATGGTGTCTGAAGGTTCCACTTCCAGAGTAATTGTCTTTCCAGTGAGTGTCTTGACAA 967783 Query 82801 ATATCTGCAT 82810 | || ||||| Sbjct 967782 AGATTTGCAT 967773 Score = 125 bits (138), Expect = 1e-23 Identities = 141/189 (75%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 82623 TTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATT 82682 || || || ||||||||||| ||| |||| || || || || ||||| ||||||||||| Sbjct 966177 TTTTGGATGTTATAATCAGAAAGAGTTCTGCCATCCTCCAGCTGTTTACCAGCAAAGATC 966118 Query 82683 AGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCA 82742 | ||| || || || || || || |||||||| || || |||||||| || || |||||| Sbjct 966117 AATCTCTGCTGGTCAGGTGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTAACGTTTTCA 966058 Query 82743 ATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAAT 82802 || || || ||||| ||||| | || || || || || || | || || || || Sbjct 966057 ATAGTGTCTGATGGTTCCACTTCAAGGGTAATAGTTTTTCCCGTAAGAGTTTTGACGAAG 965998 Query 82803 ATCTGCATT 82811 ||||||||| Sbjct 965997 ATCTGCATT 965989 Score = 116 bits (128), Expect = 7e-21 Identities = 140/189 (74%), Gaps = 1/189 (1%) Strand=Plus/Minus Query 82623 TTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATT 82682 ||||| || || ||||| || || ||| || || || || ||||| ||||||||||| Sbjct 973148 TTCTGAATGTTGTAATCTGAGAGTGTTCGGCCATCCTCCAGCTGTTTACCAGCAAAGATC 973089 Query 82683 AGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCA 82742 | ||| || || || || || || |||||||| ||||| ||| |||| || ||||| ||| Sbjct 973088 AATCTCTGCTGGTCAGGTGGAATGCCTTCCTTGTCTTGGATC-TTGCCTTAACATTCTCA 973030 Query 82743 ATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAAT 82802 |||||||| ||||| ||||| | || || || || || || | || || || || Sbjct 973029 ATCGTATCTGATGGTTCCACTTCAAGGGTAATAGTTTTTCCCGTAAGAGTTTTGACGAAG 972970 Query 82803 ATCTGCATT 82811 ||||||||| Sbjct 972969 ATCTGCATT 972961 Score = 111 bits (122), Expect = 3e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 82623 TTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATT 82682 |||||||| || |||||||| ||| | | || ||||| || || |||||||||||||| Sbjct 969118 TTCTGTATGTTGTAATCAGAGAGAGTGCGCCCATCTTCCAGCTGCTTTCCAGCAAAGATC 969059 Query 82683 AGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCA 82742 | ||| || || || || || || |||||||| || || ||||| || || || || ||| Sbjct 969058 AATCTCTGCTGGTCAGGTGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTAACGTTCTCA 968999 Query 82743 ATCGTATCATTAGGTTCTACTTCCAAAGT 82771 |||||||| ||||| ||||| | ||| Sbjct 968998 ATCGTATCTGATGGTTCCACTTCAAGAGT 968970 >seq1460 Length=1689650 Score = 145 bits (160), Expect = 1e-29 Identities = 146/190 (77%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 82621 CTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGA 82680 ||||||| ||||| ||||| || ||| |||| || ||||| ||||| |||||||| || | Sbjct 1136601 CTTTCTGGATATTGTAATCTGAAAGAGTTCTCCCATCTTCAAGTTGCTTTCCAGCGAAAA 1136660 Query 82681 TTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTT 82740 | || ||||| || || || || |||||||| ||||| ||||| || || || ||||||| Sbjct 1136661 TAAGCCTTTGCTGGTCAGGTGGAATTCCTTCTTTATCCTGAATTTTAGCCTTCACATTTT 1136720 Query 82741 CAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAA 82800 |||| || || || || || || | |||||||| || || || || || ||||| | Sbjct 1136721 CAATGGTGTCCGCTGGCTCAACCTCAAGGGTTATCGTTTTACCCGTTAAGGTTTTTACGA 1136780 Query 82801 ATATCTGCAT 82810 | |||||||| Sbjct 1136781 AAATCTGCAT 1136790 Score = 86.0 bits (94), Expect = 1e-11 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| || | ||| | ||| || ||||| | || ||||||||||| ||||||||||| || Sbjct 729299 ACCACCACGCAACCTCAGTACCAAGTGTAAGGTGGATTCTTTCTGAATATTATAATCTGA 729358 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || | || || || |||| || || ||||||||||| | ||| || ||||| || || Sbjct 729359 TAAAGTTTTATTATCCTCTAACTGCTTACCAGCAAAGATCAATCTCTGCTGATCAGGGGG 729418 Query 82703 TATTCCT 82709 || ||| Sbjct 729419 AATGCCT 729425 >seq7337 Length=451322 Score = 140 bits (154), Expect = 6e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 ||||| | || || || ||||||||||| |||||||| || || | | | || || Sbjct 240211 AGAACAAGATGAAGTGTTGATTCTTTCTGAATATTATAGTCGGACAAGGTACGTCCATCC 240152 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 || || || || ||||||||||| ||||| ||||| || || || || || ||||||||| Sbjct 240151 TCAAGCTGCTTGCCAGCAAAGATGAGTCTCTGTTGGTCAGGTGGGATACCCTCCTTATCT 240092 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778 || || || ||||||||||||||||| || || || || || |||| || || ||| Sbjct 240091 TGGATTTTGGCTTTTACATTTTCAATTGTGTCTGATGGCTCAACCTCCAGGGTGATGGTC 240032 Query 82779 TTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || | ||||| || || |||||||| Sbjct 240031 TTCCCGGTAAGAGTCTTCACGAAGATCTGCAT 240000 Score = 134 bits (148), Expect = 3e-26 Identities = 143/189 (76%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 82623 TTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATT 82682 ||||| ||||| || || || || | | || ||||| | ||||| ||||| || || Sbjct 238497 TTCTGGATATTGTAGTCTGAGAGCGTGCGGCCATCTTCCAACTGTTTGCCAGCGAAAATC 238438 Query 82683 AGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCA 82742 | |||||| ||||| || || |||||||| || || ||||| || || |||||||| ||| Sbjct 238437 AATCTTTGCTGATCAGGGGGAATTCCTTCTTTGTCCTGAATTTTGGCCTTTACATTCTCA 238378 Query 82743 ATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAAT 82802 || ||||| | ||| ||||||||||| || ||||| || ||||| || || || || Sbjct 238377 ATAGTATCGGAGGCTTCGACTTCCAAAGTGATGGTCTTCCCAGTCAAAGTTTTAACGAAG 238318 Query 82803 ATCTGCATT 82811 ||||||||| Sbjct 238317 ATCTGCATT 238309 >seq280 Length=259806 Score = 93.3 bits (102), Expect = 8e-14 Identities = 74/89 (83%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 198340 TATGGAATGCATCGCAAATACAGATGATAAGAGAAGGAAAAATGCATAGTTTTTTAAGAA 198399 ||||||||||||| || ||||| ||||| | || || ||||||||| |||| | |||| Sbjct 230463 TATGGAATGCATCTCAGATACAAATGATGAAGGAGGGCAAAATGCATGGTTTCCTCAGAA 230522 Query 198400 TGTACTGGGCTAAAAAGATACTTGAATGG 198428 ||||||||||||||||||| | |||||| Sbjct 230523 TGTACTGGGCTAAAAAGATGTTGGAATGG 230551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981699315166274