Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ladona_20fulva_20[genbank_20GCA_5F000376725.1_202013-04-23] 10,166 sequences; 1,158,111,285 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq2348 105 2e-17 >seq2348 Length=1756034 Score = 105 bits (116), Expect = 2e-17 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 110743 AGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCT 110802 ||||| ||| ||||||| || ||||| || || |||||| | || || |||||||| | Sbjct 611808 AGAGACCTGGTGCATTTGCCATTTATCTTGAGCCATGGCATGCTGACATTTTTGAATTTT 611867 Query 110803 TAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAA 110862 | || || || ||| |||| || ||| ||||| |||||| | || || || Sbjct 611868 TGGACCTGAAGAAGAATACAGGAAAAGAGGAAGTGAGAGCCCGTGATCTCTTCTACGCCC 611927 Query 110863 TGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGT 110922 |||||||| | || || ||||||||||||||| || |||||| | ||| | | |||| Sbjct 611928 TGTGGATTCCTGACTTGTTCATGAAACGTGTTGAAAGTAATGGCGTATGGAGTTTGATGT 611987 Query 110923 GTCCTCAT 110930 |||| ||| Sbjct 611988 GTCCCCAT 611995 Score = 86.0 bits (94), Expect = 1e-11 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 110988 TATGAAAAAGAAGGCAAGTTTCGCAAACAAATTCCAGCTCAAGAACTTTGGTTCAAAATC 111047 |||||| ||||||| | |||||| ||| ||| ||| || |||||||||| | | Sbjct 614079 TATGAAGCAGAAGGCCGCTATCGCAAGCAAGTTCAAGCCCAGCAACTTTGGTTTGCAGTA 614138 Query 111048 CTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCATATTAATCGC 111107 ||||||| || | |||||||||||||| | ||| | || |||||| | ||| | Sbjct 614139 ATTGAATCTCAGATAGAAACTGGAACTCCATTTATGCTATACAAAGATGCTTGCAATAGA 614198 Query 111108 AAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTG 111154 ||||||||||| || | ||||| || || | |||||| |||| Sbjct 614199 AAATCTAATCAGCAAAACCTTGGAACCATCAAATGCAGTAATCTGTG 614245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186658215407526