Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ladona_20fulva_20[genbank_20GCA_5F000376725.1_202013-04-23] 10,166 sequences; 1,158,111,285 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq3560 104 6e-17 seq1460 86.0 1e-11 >seq3560 Length=1522174 Score = 104 bits (114), Expect = 6e-17 Identities = 135/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || |||||| || || || || |||||||| |||||||||||||||||| || ||| Sbjct 965688 CAAATATTTGTTAAGACTCTGACTGGAAAAACTATCACTTTGGAAGTGGAACCGTCAGAC 965747 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| ||||| || ||||| ||| || ||| || Sbjct 965748 ACCATTGAGAACGTCAAGGCCAAGATCCAAGATAAGGAAGGCATTCCTCCCGACCAACAG 965807 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | |||||||| || || ||| |||||||||| || || | | ||||| ||| || Sbjct 965808 AGATTGATCTTCGCTGGCAAACAGCTGGAAGATGGCAGAACCCTTTCAGATTATAACATC 965867 Query 206353 CAGAAAG 206359 || |||| Sbjct 965868 CAAAAAG 965874 Score = 89.7 bits (98), Expect = 1e-12 Identities = 132/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| ||| || ||||| ||||| || || ||| ||||||||||| ||| ||| Sbjct 967776 CAAATCTTTGTCAAGACACTCACTGGAAAGACAATTACTCTGGAAGTGGAACCTTCAGAC 967835 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||| || || || || ||||| ||| || ||| || Sbjct 967836 ACCATTGAGAATGTTAAGGCAAAAATCCAGGACAAGGAAGGCATTCCACCTGACCAGCAG 967895 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | ||||| || || || ||| |||| ||||| | || | | ||||||||| || Sbjct 967896 AGATTGATCTTTGCTGGTAAACAGCTGGAGGATGGCCGAACACTCTCAGATTACAACATC 967955 Query 206353 CAGAAAG 206359 ||||||| Sbjct 967956 CAGAAAG 967962 Score = 84.2 bits (92), Expect = 5e-11 Identities = 124/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || || ||||| ||||| || ||| | ||||||||| || ||||| | || Sbjct 971308 CAAGACACTTACAGGGAAAACTATAACTCTTGAAGTGGAACCGTCAGACACTATTGAGAA 971367 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| ||||| || || ||||| || ||| || ||| || ||| | ||||| Sbjct 971368 CGTGAAGGCCAAGATCCAGGATAAAGAGGGCATTCCTCCTGACCAGCAGAGATTGATCTT 971427 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAG 206359 || |||||||||||||| ||||| | || | | ||||||||| | || |||| Sbjct 971428 TGCAGGAAAGCAGTTGGAGGATGGTCGTACCCTCTCTGATTACAACATTCAAAAAG 971483 >seq1460 Length=1689650 Score = 86.0 bits (94), Expect = 1e-11 Identities = 124/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || |||||||| || | || || || | ||||| | ||| Sbjct 1136775 AAAACCTTAACGGGTAAAACGATAACCCTTGAGGTTGAGCCAGCGGACACCATTGAAAAT 1136716 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || ||||| || |||||||||||| || ||| ||||| ||||| ||| Sbjct 1136715 GTGAAGGCTAAAATTCAGGATAAAGAAGGAATTCCACCTGACCAGCAAAGGCTTATTTTC 1136656 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAG 206359 || |||||||| | |||||||| || ||| | | |||||||| ||||||||| Sbjct 1136655 GCTGGAAAGCAACTTGAAGATGGGAGAACTCTTTCAGATTACAATATCCAGAAAG 1136601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181666865624886