Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ladona_20fulva_20[genbank_20GCA_5F000376725.1_202013-04-23] 10,166 sequences; 1,158,111,285 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq615 147 3e-30 seq2348 127 3e-24 seq7298 91.5 2e-13 >seq615 Length=2534639 Score = 147 bits (162), Expect = 3e-30 Identities = 162/215 (75%), Gaps = 3/215 (1%) Strand=Plus/Plus Query 39652 AATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATAT 39711 ||| | |||||| ||||| || | |||||||| || || | |||||| ||||||||||| Sbjct 1866965 AATAAGTTCGTTGGAAAACGTCAAACCAGGCATAAGTCCTCTCTTTTTCAGCCAAAATAT 1867024 Query 39712 GGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTC 39771 | |||||| ||||| |||||||| || ||||||||||||||||||||||| | | || Sbjct 1867025 TGAAGCAAATGATCCCGAAAAGAAAATTCCTTCTACTGCTGCAAATGCAACCACACGTTC 1867084 Query 39772 TCCGTAACTT---GTATCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTAC 39828 ||| ||||| |||||| | ||||||| | |||||| ||| ||||| || Sbjct 1867085 ACCGAAACTTGCAGTATCACTTGCAATCCACTGCAATGCCCACGTAGCCTTCTTTCGAAC 1867144 Query 39829 ACAAGGCATTGTTTCTATAGCATTAAAGAGATAAT 39863 ||| || | ||||| || ||||| || ||| ||| Sbjct 1867145 ACACGGTAAGGTTTCAATGGCATTGAATAGAAAAT 1867179 Score = 118 bits (130), Expect = 1e-21 Identities = 130/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 39878 TCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCC 39937 ||||| | || || ||||| | ||| |||||||| ||||| | ||||| || || Sbjct 1867268 TCTTTGATGTAAGTGTCTATGAGAAGAGAGTACATTTCCGAATGAACATTTTCCATGGCT 1867327 Query 39938 ATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCC 39997 || ||||||||||||||||| |||||||| | |||||| || ||| || |||| |||| Sbjct 1867328 ATTTGAAATCCGTAAAAACACCTTGCTTCTGGAATTTGAACTTCTTGACTGAATCGTTCC 1867387 Query 39998 GCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATG 40050 ||| |||||| || || |||||||| || || ||||| || ||||| || Sbjct 1867388 ACCAGATTTTCGTTGACGATTCCATCCGATGCCGCGAAAAAAGCTAATACGTG 1867440 >seq2348 Length=1756034 Score = 127 bits (140), Expect = 3e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 69516 TTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGA 69575 ||||||||| || |||||| ||| |||||| |||| ||||| ||||||||||| Sbjct 612037 TTCGAATTCTTCACCCCAACAATCGAACAATCCTGGACTTTCATGGGGACACATCAAACT 611978 Query 69576 CCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAA 69635 ||| || ||| | | ||| |||||||| || | || |||||||| || || || Sbjct 611977 CCATACGCCATTACTTTCAACACGTTTCATGAACAAGTCAGGAATCCACAGGGCGTAGAA 611918 Query 69636 GAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCAT 69695 |||||| | || ||| ||| || ||||||||||| || || || || | ||| || | Sbjct 611917 GAGATCACGGGCTCTCACTTCCTCTTTTCCTGTATTCTTCTTCAGGTCCAAAAATTCAAA 611858 Query 69696 AATATCAGAATGCCATGGTTCTAGATATATCGC 69728 ||| |||| ||||||||| || ||||| || || Sbjct 611857 AATGTCAGCATGCCATGGCTCAAGATAAATGGC 611825 Score = 113 bits (124), Expect = 6e-20 Identities = 100/125 (80%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 69316 TATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTA 69375 |||| | |||||| ||||| |||||||| |||||||| || || || |||||||||||| Sbjct 614263 TATTCAACTATCTCAGTACACAGATTACTGCATTTGATGGTTCCAAGGTTTTGCTGATTA 614204 Query 69376 CTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGAT 69435 ||| | || || || || ||||| || ||||| ||||| |||||||| ||||||||| Sbjct 614203 GATTTTCTATTGCAAGCATCTTTGTATAGCATAAATGGAGTTCCAGTTTCTATCTGAGAT 614144 Query 69436 TCGAT 69440 || || Sbjct 614143 TCAAT 614139 Score = 107 bits (118), Expect = 3e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 |||||||||||||| | |||||| | ||||| ||||| ||||| ||||| | ||| Sbjct 617934 TGAAATTCCCCAGAAAGCACTCTCCTGGTGTATATATTGGAAGTATAAGGTTCAATTGAT 617875 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 ||||| || || | |||||| ||||| || ||||||||||| || |||| | | | | Sbjct 617874 TCATTGTTGCCTAAAATTTGGGCAGTGGAAGCAGTTGGCATTGGGGCCATAAGAAGAGAA 617815 Query 68839 TTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGAT 68898 || | || |||||| | || || | || | | | ||| ||||| ||||| || Sbjct 617814 TTACGAACTCCATGTTTCGCAATGTTTGCCTTCAAAACATCCCAGTCCCAGAGATCTGAC 617755 Query 68899 GGTACAACATTCCAAAGATCGTATTGTAGAAT 68930 ||| |||||||| | ||| | ||||| ||| Sbjct 617754 GGTTTCACATTCCACATATCTTGTTGTAAAAT 617723 Score = 87.8 bits (96), Expect = 2e-12 Identities = 128/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 69970 CTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAAC 70029 || || | |||| |||| ||| | ||||| || | || ||||| || ||||| || Sbjct 611236 CTTGAAAGTTGAGGATGAGGAGTAGCAGCATTGAAAAGCGTTGGAGAGGCATGAGTAAAG 611177 Query 70030 CATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATT 70089 | ||||| | ||||| ||||||||||| |||| || | |||| | ||| || Sbjct 611176 AAACGCTCAGATAAGAGATTATATGTTTCAATGGCTGCCTCCACATCCTCCCCATGGATC 611117 Query 70090 CCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTC 70149 || | || ||||||||||||||||||||||||| ||| | |||| || ||| ||| Sbjct 611116 CCCACAGCTACACGCATCAACATATGCTGAGGTCTCTCTGCTACTTTACCATCTATCTTC 611057 Query 70150 A 70150 | Sbjct 611056 A 611056 >seq7298 Length=1178 Score = 91.5 bits (100), Expect = 2e-13 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 68450 AGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATT 68509 |||||||||| || || || ||| |||| || || ||||| ||||||| || | Sbjct 1045 AGAAATGCATGGAGGTGAGCTTTCCGTAATTTGGCTCAGCAATATGTATATTCAAAGACT 986 Query 68510 GACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAA 68569 | ||||| || ||||| |||||||| ||| | ||||||| || || | || ||||||| Sbjct 985 GGCTTTGGTCAATGAATGCTCCTCTGTCTACAGCCATTTCAATTATGTTTTTCTGAGGAA 926 Query 68570 TTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGG 68609 ||||||| | |||| | | | || || | |||||| || Sbjct 925 TTTCCCATACAGTCCTGTACAGCTTCTTCAAATCATCAGG 886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686821511064240