Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ladona_20fulva_20[genbank_20GCA_5F000376725.1_202013-04-23] 10,166 sequences; 1,158,111,285 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq615 152 4e-32 seq2170 140 3e-28 >seq615 Length=2534639 Score = 152 bits (168), Expect = 4e-32 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 43808 TGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCT 43867 ||| || |||| ||| | |||| |||||| ||||| || || || ||||| || Sbjct 1867479 TGGGTTTCATTGAAAGAAGAAGAGCGACATTTCTTATCTCACGTATTAGCTTTTTTCGCG 1867420 Query 43868 GCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTA 43927 || || || || ||||| |||||| |||| || || |||||||||||| | Sbjct 1867419 GCATCGGATGGAATCGTCAACGAAAATCTGGTGGAACGATTCAGTCAAGAAGTTCAAATT 1867360 Query 43928 CCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATG 43987 ||||||||| | |||||||| || |||||||| ||||| |||||| |||||||||||||| Sbjct 1867359 CCAGAAGCAAGGTGTTTTTACGGATTTCAAATAGCCATGGAAAATGTTCATTCGGAAATG 1867300 Query 43988 TACAGTCTTCTGATAGATACGTACATCAAAGA 44019 ||| |||||| ||||| || ||||||||||| Sbjct 1867299 TACTCTCTTCTCATAGACACTTACATCAAAGA 1867268 Score = 95.1 bits (104), Expect = 1e-14 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 44119 TTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTT 44178 ||| || ||||| | || || ||||||| || ||||| ||||||||||| ||||| || Sbjct 1867091 TTTCGGTGAACGTGTGGTTGCATTTGCAGCAGTAGAAGGAATTTTCTTTTCGGGATCATT 1867032 Query 44179 TGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGA 44238 ||| | ||||||||| | || || |||| | |||||||| ||||||||||| || || Sbjct 1867031 TGCTTCAATATTTTGGCTGAAAAAGAGAGGACTTATGCCTGGTTTGACGTTTTCCAACGA 1866972 >seq2170 Length=2407512 Score = 140 bits (154), Expect = 3e-28 Identities = 238/345 (69%), Gaps = 0/345 (0%) Strand=Plus/Minus Query 40862 TGAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGA 40921 || |||||| | |||||||| ||||||||||||| | | || ||||| || |||| Sbjct 1141440 TGCAGGTGACTTGGGTCCTGTGTATGGATTTCAGTGGAGGCACTTTGGGGCTGAATACAT 1141381 Query 40922 CACTATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATAC 40981 |||||| | ||| ||| | |||||| |||||||||| |||| || | Sbjct 1141380 GACTATGAATGATGACTATTCTGGAAAAGGAGTGGATCAATTGGCTCAAATTATTGAAAA 1141321 Query 40982 GATTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGT 41041 ||| || | || || || | ||| || |||| || ||||||||| | || || Sbjct 1141320 AATTCGTACCAACCCAAATGATCGCAGAATATTAATGTGTGCTTGGAACCCAGCTGATGT 1141261 Query 41042 ACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGA 41101 | |||||| || ||||||||||| | || ||||||||| ||| ||||| || Sbjct 1141260 TCCAAAGATGGCTTTACCACCTTGTCACTGTTTGGTTCAGTTTTATGTTGCTAATGGAGA 1141201 Query 41102 ACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACAT 41161 ||| || || || | |||||||| |||| || | || || || || || || ||||| Sbjct 1141200 ACTTTCTTGCCAGCTCTATCAAAGGTCAGCAGATGTTGGTCTTGGAGTTCCTTTCAACAT 1141141 Query 41162 AGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAA 41206 || ||||| | | | |||||||||||||||||| |||| || Sbjct 1141140 TGCAAGTTACTCATTATTGACGTATATGATTGCACACATTACTAA 1141096 Score = 140 bits (154), Expect = 3e-28 Identities = 238/345 (69%), Gaps = 0/345 (0%) Strand=Plus/Minus Query 40862 TGAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGA 40921 || |||||| | |||||||| ||||||||||||| | | || ||||| || |||| Sbjct 1149134 TGCAGGTGACTTGGGTCCTGTGTATGGATTTCAGTGGAGGCACTTTGGGGCTGAATACAT 1149075 Query 40922 CACTATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATAC 40981 |||||| | ||| ||| | |||||| |||||||||| |||| || | Sbjct 1149074 GACTATGAATGATGACTATTCTGGAAAAGGAGTGGATCAATTGGCTCAAATTATTGAAAA 1149015 Query 40982 GATTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGT 41041 ||| || | || || || | ||| || |||| || ||||||||| | || || Sbjct 1149014 AATTCGTACCAACCCAAATGATCGCAGAATATTAATGTGTGCTTGGAACCCAGCTGATGT 1148955 Query 41042 ACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGA 41101 | |||||| || ||||||||||| | || ||||||||| ||| ||||| || Sbjct 1148954 TCCAAAGATGGCTTTACCACCTTGTCACTGTTTGGTTCAGTTTTATGTTGCTAATGGAGA 1148895 Query 41102 ACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACAT 41161 ||| || || || | |||||||| |||| || | || || || || || || ||||| Sbjct 1148894 ACTTTCTTGCCAGCTCTATCAAAGGTCAGCAGATGTTGGTCTTGGAGTTCCTTTCAACAT 1148835 Query 41162 AGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAA 41206 || ||||| | | | |||||||||||||||||| |||| || Sbjct 1148834 TGCAAGTTACTCATTATTGACGTATATGATTGCACACATTACTAA 1148790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397406755946830